ENSDARG00000061517


Danio rerio

Features
Gene ID: ENSDARG00000061517
  
Biological name :lrp1bb
  
Synonyms : low density lipoprotein receptor-related protein 1Bb / lrp1bb
  
Possible biological names infered from orthology : LDL receptor related protein 1B / LRP1B / Q9NZR2
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 36314867
Gene end: 36694998
  
Corresponding Affymetrix probe sets: Dr.13449.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000143854
Ensembl peptide - ENSDARP00000116076
NCBI entrez gene - 559293     See in Manteia.
RefSeq - XM_021478999
swissprot - F1R6C6
swissprot - A0A286Y9K4
ZFIN ID - ZDB-GENE-070912-401
Ensembl - ENSDARG00000061517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRP1BENSGALG00000012407Gallus gallus
 LRP1BENSG00000168702Homo sapiens
 Lrp1bENSMUSG00000049252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrp1ab / low density lipoprotein receptor-related protein 1Ab / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000002914657
lrp1aa / low density lipoprotein receptor-related protein 1Aa / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000009782756
lrp1ba / low density lipoprotein receptor-related protein 1Ba / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000000478956
lrp2a / low density lipoprotein receptor-related protein 2a / LRP2* / P98164* / A2ARV4* / LDL receptor related protein 2* / low density lipoprotein receptor-related protein 2*ENSDARG0000010250634
lrp2b / low density lipoprotein receptor-related protein 2bENSDARG0000000790632
lrp1ba / low density lipoprotein receptor-related protein 1Ba / Gm19410*ENSDARG0000009417126
lrp5 / low density lipoprotein receptor-related protein 5 / O75197* / LDL receptor related protein 5*ENSDARG0000000692110
lrp13 / low-density lipoprotein receptor related-protein 13 / Gm19410*ENSDARG000000234798
si:dkey-88l16.3 / Gm19410*ENSDARG000000940558
lrp8 / low density lipoprotein receptor-related protein 8, apolipoprotein e receptor / Q14114* / Q924X6* / LDL receptor related protein 8* / Low-density lipoprotein receptor-related protein 8 *ENSDARG000000700747
vldlr / very low density lipoprotein receptor / P98155* / P98156*ENSDARG000000062577
CABZ01071171.1 / Danio rerio low density lipoprotein receptor-related protein 4 (lrp4), mRNA. / LRP4* / Q8VI56* / O75096* / LDL receptor related protein 4* / Low-density lipoprotein recepto...ENSDARG000001163536
ldlrb / low density lipoprotein receptor b / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000267596
ldlra / low density lipoprotein receptor a / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000294766
lrp6 / low density lipoprotein receptor-related protein 6 / O75581* / LDL receptor related protein 6*ENSDARG000001001435


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr