ENSDARG00000029146


Danio rerio

Features
Gene ID: ENSDARG00000029146
  
Biological name :lrp1ab
  
Synonyms : low density lipoprotein receptor-related protein 1Ab / lrp1ab
  
Possible biological names infered from orthology : LDL receptor related protein 1 / LRP1 / Q07954
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 25452656
Gene end: 25686954
  
Corresponding Affymetrix probe sets: Dr.16841.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000082641
Ensembl peptide - ENSDARP00000156401
NCBI entrez gene - 565797     See in Manteia.
swissprot - F1QY34
ZFIN ID - ZDB-GENE-030131-7126
Ensembl - ENSDARG00000029146
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRP1ENSG00000123384Homo sapiens
 Lrp1ENSMUSG00000040249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrp1aa / low density lipoprotein receptor-related protein 1Aa / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000009782781
lrp1bb / low density lipoprotein receptor-related protein 1Bb / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000006151756
lrp1ba / low density lipoprotein receptor-related protein 1Ba / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000000478945
lrp2a / low density lipoprotein receptor-related protein 2a / LRP2* / P98164* / A2ARV4* / LDL receptor related protein 2* / low density lipoprotein receptor-related protein 2*ENSDARG0000010250636
lrp2b / low density lipoprotein receptor-related protein 2bENSDARG0000000790634
lrp1ba / low density lipoprotein receptor-related protein 1Ba / Gm19410*ENSDARG0000009417117
lrp5 / low density lipoprotein receptor-related protein 5 / O75197* / LDL receptor related protein 5*ENSDARG0000000692111
lrp13 / low-density lipoprotein receptor related-protein 13 / Gm19410*ENSDARG000000234798
si:dkey-88l16.3 / Gm19410*ENSDARG000000940558
CABZ01071171.1 / Danio rerio low density lipoprotein receptor-related protein 4 (lrp4), mRNA. / LRP4* / Q8VI56* / O75096* / LDL receptor related protein 4* / Low-density lipoprotein recepto...ENSDARG000001163537
lrp8 / low density lipoprotein receptor-related protein 8, apolipoprotein e receptor / Q14114* / Q924X6* / LDL receptor related protein 8* / Low-density lipoprotein receptor-related protein 8 *ENSDARG000000700747
vldlr / very low density lipoprotein receptor / P98155* / P98156*ENSDARG000000062577
ldlrb / low density lipoprotein receptor b / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000267596
ldlra / low density lipoprotein receptor a / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000294766
lrp6 / low density lipoprotein receptor-related protein 6 / O75581* / LDL receptor related protein 6*ENSDARG000001001435


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR032485  Domain of unknown function DUF5050


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1901342 regulation of vasculature development IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Scavenging of heme from plasma


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001286 caudal vein plexus caudal vein plexus decreased branchiness , abnormal
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 ZFA:0005024 trunk vasculature trunk vasculature morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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