ENSDARG00000026908


Danio rerio

Features
Gene ID: ENSDARG00000026908
  
Biological name :tmed2
  
Synonyms : tmed2 / transmembrane p24 trafficking protein 2
  
Possible biological names infered from orthology : Q15363 / Q9R0Q3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 3419832
Gene end: 3427630
  
Corresponding Affymetrix probe sets: Dr.2964.1.S1_at (Zebrafish Array)   NM_199548_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121973
Ensembl peptide - ENSDARP00000037031
NCBI entrez gene - 321550     See in Manteia.
RefSeq - NM_199548
RefSeq - XM_021479108
RefSeq Peptide - NP_955842
swissprot - Q7ZW75
swissprot - E9QE12
ZFIN ID - ZDB-GENE-030131-269
Ensembl - ENSDARG00000026908
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMED2ENSGALG00000003307Gallus gallus
 TMED2ENSG00000086598Homo sapiens
 Tmed2ENSMUSG00000029390Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmed7 / transmembrane p24 trafficking protein 7 / Q9Y3B3* / TMED7-TICAM2* / TMED7-TICAM2 readthrough*ENSDARG0000004602230
tmed5 / transmembrane p24 trafficking protein 5 / Q9CXE7* / Q9Y3A6*ENSDARG0000000876525
tmed3 / transmembrane p24 trafficking protein 3 / Q78IS1* / Q9Y3Q3* / Transmembrane emp24 domain-containing protein 3 *ENSDARG0000002881625
tmed1b / transmembrane p24 trafficking protein 1b / TMED1* / Q13445* / transmembrane p24 trafficking protein 1*ENSDARG0000001725524
tmed1a / transmembrane p24 trafficking protein 1a / TMED1* / Q13445* / transmembrane p24 trafficking protein 1*ENSDARG0000003132524


Protein motifs (from Interpro)
Interpro ID Name
 IPR009038  GOLD domain
 IPR015720  TMP21-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Pre-NOTCH Processing in Golgi
COPII-mediated vesicle transport
Cargo concentration in the ER
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000004261 tmed9 / transmembrane p24 trafficking protein 9 / Q99KF1* / Q9BVK6*  / complex
 ENSDARG00000035131 surf4l / surfeit gene 4, like / SURF4* / Q64310* / O15260* / surfeit 4* / Surfeit locus protein 4 *  / complex
 ENSDARG00000041391 tmed10 / transmembrane p24 trafficking protein 10 / P49755* / Q9D1D4* / Transmembrane emp24 domain-containing protein 10 *  / complex
 ENSDARG00000026908 tmed2 / transmembrane p24 trafficking protein 2 / Q15363* / Q9R0Q3*  / complex






 

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