ENSDARG00000034043


Danio rerio

Features
Gene ID: ENSDARG00000034043
  
Biological name :irx5a
  
Synonyms : iroquois homeobox 5a / irx5a
  
Possible biological names infered from orthology : Iroquois-class homeodomain protein IRX-5 / iroquois homeobox 5 / IRX5 / P78411 / Q9JKQ4
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 35706765
Gene end: 35710263
  
Corresponding Affymetrix probe sets: Dr.12625.1.S1_at (Zebrafish Array)   NM_001045227_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043856
Ensembl peptide - ENSDARP00000153758
NCBI entrez gene - 573346     See in Manteia.
RefSeq - XM_021477593
RefSeq - NM_001045227
RefSeq Peptide - NP_001038692
swissprot - Q1LXU5
ZFIN ID - ZDB-GENE-010716-2
Ensembl - ENSDARG00000034043
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRX5ENSGALG00000003588Gallus gallus
 IRX5ENSG00000176842Homo sapiens
 Irx5ENSMUSG00000031737Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irx5b / iroquois homeobox 5b / IRX5* / P78411* / Q9JKQ4* / iroquois homeobox 5* / Iroquois-class homeodomain protein IRX-5 *ENSDARG0000007407048
irx2a / iroquois homeobox 2a / IRX2* / P81066* / Q9BZI1* / iroquois homeobox 2* / Iroquois-class homeodomain protein IRX-2 *ENSDARG0000000178538
irx1a / iroquois homeobox 1a / IRX1* / P78414* / iroquois homeobox 1*ENSDARG0000010183130
irx3a / iroquois homeobox 3a / IRX3* / P78415* / P81067* / iroquois homeobox 3* / Iroquois-class homeodomain protein IRX-3 *ENSDARG0000010107629
irx1b / iroquois homeobox 1bENSDARG0000005659429
irx4a / iroquois homeobox 4a / IRX4* / P78413* / Q9QY61* / iroquois homeobox 4* / Iroquois-class homeodomain protein IRX-4 *ENSDARG0000003564828
irx6a / iroquois homeobox 6a / IRX6* / P78412* / Q9ER75* / iroquois homeobox 6* / Iroquois-class homeodomain protein IRX-6 *ENSDARG0000003442027
irx4b / iroquois homeobox 4b / IRX4* / P78413* / Q9QY61* / iroquois homeobox 4* / Iroquois-class homeodomain protein IRX-4 *ENSDARG0000003605126
irx3b / iroquois homeobox 3b / IRX3* / P78415* / iroquois homeobox 3*ENSDARG0000003113826
irx7 / iroquois homeobox 7ENSDARG0000000260122
mkxa / mohawk homeobox a / MKX* / Q8IYA7* / mohawk homeobox*ENSDARG0000007545014
mkxb / mohawk homeobox b / MKX* / Q8IYA7* / mohawk homeobox*ENSDARG0000011418214


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003893  Iroquois-class homeodomain protein
 IPR008422  Homeobox KN domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0032330 regulation of chondrocyte differentiation IGI
 biological_processGO:0072498 embryonic skeletal joint development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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