ENSDARG00000041381


Danio rerio

Features
Gene ID: ENSDARG00000041381
  
Biological name :arntl2
  
Synonyms : arntl2 / aryl hydrocarbon receptor nuclear translocator-like 2
  
Possible biological names infered from orthology : Aryl hydrocarbon receptor nuclear translocator-like protein 2 / Q2VPD4 / Q8WYA1
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 15569627
Gene end: 15610856
  
Corresponding Affymetrix probe sets: Dr.23040.1.A1_at (Zebrafish Array)   Dr.8240.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134619
Ensembl peptide - ENSDARP00000139384
NCBI entrez gene - 58099     See in Manteia.
swissprot - A0A0R4IH97
swissprot - A0A0R4IR76
ZFIN ID - ZDB-GENE-000509-2
Ensembl - ENSDARG00000041381
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARNTL2ENSGALG00000014096Gallus gallus
 ARNTL2ENSG00000029153Homo sapiens
 Arntl2ENSMUSG00000040187Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arntl1a / aryl hydrocarbon receptor nuclear translocator-like 1a / ARNTL* / O00327* / Q9WTL8* / aryl hydrocarbon receptor nuclear translocator like* / Mus musculus aryl hydrocarbon receptor...ENSDARG0000000679154
arntl1b / aryl hydrocarbon receptor nuclear translocator-like 1b / ARNTL* / O00327* / Q9WTL8* / aryl hydrocarbon receptor nuclear translocator like* / Mus musculus aryl hydrocarbon receptor...ENSDARG0000003573253
arnt2 / aryl-hydrocarbon receptor nuclear translocator 2 / Q61324* / Q9HBZ2*ENSDARG0000010369731
arnt / aryl hydrocarbon receptor nuclear translocator / P27540* / P53762*ENSDARG0000002185527
clocka / clock circadian regulator a / CLOCK* / O15516* / O08785* / clock circadian regulator* / Circadian locomoter output cycles protein kaput *ENSDARG0000001170321
clockb / clock circadian regulator b / CLOCK* / O15516* / O08785* / clock circadian regulator* / Circadian locomoter output cycles protein kaput *ENSDARG0000000363121
npas2 / neuronal PAS domain protein 2 / Q99743*ENSDARG0000001653619
epas1b / endothelial PAS domain protein 1b / EPAS1* / Q99814* / P97481* / endothelial PAS domain protein 1* / Endothelial PAS domain-containing protein 1 *ENSDARG0000005767118
hif1ab / hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) b / HIF1A* / Q61221* / Q16665* / Hypoxia-inducible factor 1-alpha * / hypoxia inducible fact...ENSDARG0000003429318
hif1aa / hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) a / HIF1A* / Q61221* / Q16665* / Hypoxia-inducible factor 1-alpha * / hypoxia inducible fact...ENSDARG0000000618118
sim1a / single-minded family bHLH transcription factor 1a / SIM1* / Q61045* / P81133* / Single-minded homolog 1 * / single-minded family bHLH transcription factor 1*ENSDARG0000002331618
NPAS3 / neuronal PAS domain protein 3 / Q8IXF0*ENSDARG0000010982017
epas1a / endothelial PAS domain protein 1a / EPAS1* / Q99814* / P97481* / endothelial PAS domain protein 1* / Endothelial PAS domain-containing protein 1 *ENSDARG0000000869717
npas1 / neuronal PAS domain protein 1 / P97459* / Q99742* / Neuronal PAS domain-containing protein 1 *ENSDARG0000001587616
sim1b / single-minded family bHLH transcription factor 1b / SIM1* / Q61045* / P81133* / Single-minded homolog 1 * / single-minded family bHLH transcription factor 1*ENSDARG0000001378916
hif1al / hypoxia-inducible factor 1, alpha subunit, like / HIF3A* / Q9Y2N7* / Q0VBL6* / Hypoxia-inducible factor 3-alpha * / hypoxia inducible factor 3 alpha subunit*ENSDARG0000010082616
hif1al2 / hypoxia-inducible factor 1, alpha subunit, like 2ENSDARG0000004455014
CABZ01064671.1ENSDARG000000399359


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR001067  Nuclear translocator
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013767  PAS fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007623 circadian rhythm IGI
 biological_processGO:0009416 response to light stimulus IGI
 biological_processGO:0009648 photoperiodism IEP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001285 intersegmental vessel intersegmental vessel shortened , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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