ENSMUSG00000040187


Mus musculus

Features
Gene ID: ENSMUSG00000040187
  
Biological name :Arntl2
  
Synonyms : Arntl2 / Aryl hydrocarbon receptor nuclear translocator-like protein 2 / Q2VPD4
  
Possible biological names infered from orthology : aryl hydrocarbon receptor nuclear translocator like 2 / Q8WYA1
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: G3
Gene start: 146796055
Gene end: 146833529
  
Corresponding Affymetrix probe sets: 10542764 (MoGene1.0st)   1425931_a_at (Mouse Genome 430 2.0 Array)   1429688_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000079373
Ensembl peptide - ENSMUSP00000107265
Ensembl peptide - ENSMUSP00000107266
Ensembl peptide - ENSMUSP00000121170
Ensembl peptide - ENSMUSP00000107263
NCBI entrez gene - 272322     See in Manteia.
MGI - MGI:2684845
RefSeq - XM_017321603
RefSeq - XM_006507054
RefSeq - XM_006507055
RefSeq - XM_006507056
RefSeq - XM_006507057
RefSeq - XM_006507059
RefSeq - XM_006507060
RefSeq - XM_006507061
RefSeq - NM_001289679
RefSeq - NM_001289680
RefSeq - NM_001289681
RefSeq - NM_172309
RefSeq - XM_006507048
RefSeq - XM_006507049
RefSeq - XM_006507050
RefSeq - XM_006507051
RefSeq - XM_006507052
RefSeq - XM_006507053
RefSeq Peptide - NP_758513
RefSeq Peptide - NP_001276608
RefSeq Peptide - NP_001276609
RefSeq Peptide - NP_001276610
swissprot - Q2VPD4
swissprot - E9Q994
swissprot - E9Q993
Ensembl - ENSMUSG00000040187
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arntl2ENSDARG00000041381Danio rerio
 ARNTL2ENSGALG00000014096Gallus gallus
 ARNTL2ENSG00000029153Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arntl / Q9WTL8 / Mus musculus aryl hydrocarbon receptor nuclear translocator-like (Arntl), transcript variant 3, mRNA. / O00327* / aryl hydrocarbon receptor nuclear translocator like*ENSMUSG0000005511646
Arnt / P53762 / Aryl hydrocarbon receptor nuclear translocator / P27540*ENSMUSG0000001552230
Arnt2 / Q61324 / Aryl hydrocarbon receptor nuclear translocator 2 / Q9HBZ2*ENSMUSG0000001570929
Clock / O08785 / Circadian locomoter output cycles protein kaput / O15516* / clock circadian regulator*ENSMUSG0000002923821
Npas2 / neuronal PAS domain protein 2 / Q99743*ENSMUSG0000002607721
Hif1a / Q61221 / Hypoxia-inducible factor 1-alpha / Q16665* / hypoxia inducible factor 1 alpha subunit*ENSMUSG0000002110919
Epas1 / P97481 / Endothelial PAS domain-containing protein 1 / Q99814* / endothelial PAS domain protein 1*ENSMUSG0000002414018
Sim1 / Q61045 / Single-minded homolog 1 / P81133* / single-minded family bHLH transcription factor 1*ENSMUSG0000001991318
Hif3a / Q0VBL6 / Hypoxia-inducible factor 3-alpha / Q9Y2N7* / hypoxia inducible factor 3 alpha subunit*ENSMUSG0000000432818
Npas3 / neuronal PAS domain protein 3 / Q8IXF0*ENSMUSG0000002101017
Sim2 / Q61079 / Single-minded homolog 2 / Q14190* / single-minded family bHLH transcription factor 2*ENSMUSG0000006271316
Npas1 / P97459 / Neuronal PAS domain-containing protein 1 / Q99742* / neuronal PAS domain protein 1*ENSMUSG0000000198816


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR001067  Nuclear translocator
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013767  PAS fold
 IPR035965  PAS domain superfamily
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II ISO
 biological_processGO:0007623 circadian rhythm ISO
 biological_processGO:0042753 positive regulation of circadian rhythm IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISO
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding ISO
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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