ENSDARG00000055022


Danio rerio

Features
Gene ID: ENSDARG00000055022
  
Biological name :pds5a
  
Synonyms : pds5a / PDS5 cohesin associated factor A
  
Possible biological names infered from orthology : Q29RF7
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 23323002
Gene end: 23370618
  
Corresponding Affymetrix probe sets: Dr.9343.1.S1_a_at (Zebrafish Array)   Dr.9343.1.S1_x_at (Zebrafish Array)   Dr.9343.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000109877
Ensembl peptide - ENSDARP00000140465
Ensembl peptide - ENSDARP00000119916
NCBI entrez gene - 393967     See in Manteia.
RefSeq - NM_200992
RefSeq - XM_005170916
RefSeq Peptide - NP_957286
swissprot - F1QDE7
swissprot - E9QD11
swissprot - A0A0R4IU07
ZFIN ID - ZDB-GENE-040426-1612
Ensembl - ENSDARG00000055022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDS5AENSGALG00000014286Gallus gallus
 PDS5AENSG00000121892Homo sapiens
 Pds5aENSMUSG00000029202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pds5b / PDS5 cohesin associated factor B / Q4VA53* / Q9NTI5* / Mus musculus PDS5 cohesin associated factor B (Pds5b), transcript variant 2, mRNA.*ENSDARG0000009889767


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Establishment of Sister Chromatid Cohesion
Cohesin Loading onto Chromatin
Resolution of Sister Chromatid Cohesion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014685 esco2 / Q5SPR8 / establishment of sister chromatid cohesion N-acetyltransferase 2 / Q8CIB9* / Q56NI9* / N-acetyltransferase ESCO2 *  / reaction
 ENSDARG00000058471 plk1 / polo-like kinase 1 (Drosophila) / P53350* / Q07832* / polo like kinase 1*  / reaction
 ENSDARG00000044144 wapla / WAPL cohesin release factor a / WAPL* / Q7Z5K2* / Q65Z40* / WAPL cohesin release factor*  / complex / reaction
 ENSDARG00000087554 cdk1 / cyclin-dependent kinase 1 / P06493* / P11440*  / reaction
 ENSDARG00000077057 esco1 / establishment of sister chromatid cohesion N-acetyltransferase 1 / Q5FWF5* / Q69Z69* / N-acetyltransferase ESCO1 *  / reaction
 ENSDARG00000055022 pds5a / PDS5 cohesin associated factor A / Q29RF7*  / reaction
 ENSDARG00000035655 rad21b / RAD21 cohesin complex component b / RAD21* / Q61550* / O60216* / Double-strand-break repair * / RAD21 cohesin complex component*  / reaction
 ENSDARG00000061052 F1QBY1 / nipblb / nipped-B homolog b (Drosophila) / NIPBL* / Q6KCD5* / Q6KC79* / Nipped-B-like protein * / NIPBL, cohesin loading factor*  / reaction / complex
 ENSDARG00000098272 nipbla / nipped-B homolog a (Drosophila) / NIPBL* / Q6KC79* / Q6KCD5* / Nipped-B-like protein * / NIPBL, cohesin loading factor*  / reaction / complex
 ENSDARG00000098897 pds5b / PDS5 cohesin associated factor B / Q4VA53* / Q9NTI5* / Mus musculus PDS5 cohesin associated factor B (Pds5b), transcript variant 2, mRNA.*  / reaction






 

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