ENSDARG00000098897


Danio rerio

Features
Gene ID: ENSDARG00000098897
  
Biological name :pds5b
  
Synonyms : pds5b / PDS5 cohesin associated factor B
  
Possible biological names infered from orthology : Mus musculus PDS5 cohesin associated factor B (Pds5b), transcript variant 2, mRNA. / Q4VA53 / Q9NTI5
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 33744549
Gene end: 33807758
  
Corresponding Affymetrix probe sets: Dr.14066.1.A1_at (Zebrafish Array)   XM_688861_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136712
NCBI entrez gene - 565592     See in Manteia.
RefSeq - XM_688861
swissprot - A0A0R4IP12
ZFIN ID - ZDB-GENE-091217-2
Ensembl - ENSDARG00000098897
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDS5BENSGALG00000017070Gallus gallus
 PDS5BENSG00000083642Homo sapiens
 Pds5bENSMUSG00000034021Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pds5a / PDS5 cohesin associated factor A / Q29RF7*ENSDARG0000005502263


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Establishment of Sister Chromatid Cohesion
Cohesin Loading onto Chromatin
Resolution of Sister Chromatid Cohesion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014685 esco2 / Q5SPR8 / establishment of sister chromatid cohesion N-acetyltransferase 2 / Q8CIB9* / Q56NI9* / N-acetyltransferase ESCO2 *  / reaction
 ENSDARG00000058471 plk1 / polo-like kinase 1 (Drosophila) / P53350* / Q07832* / polo like kinase 1*  / reaction
 ENSDARG00000044144 wapla / WAPL cohesin release factor a / WAPL* / Q7Z5K2* / Q65Z40* / WAPL cohesin release factor*  / complex / reaction
 ENSDARG00000087554 cdk1 / cyclin-dependent kinase 1 / P06493* / P11440*  / reaction
 ENSDARG00000077057 esco1 / establishment of sister chromatid cohesion N-acetyltransferase 1 / Q5FWF5* / Q69Z69* / N-acetyltransferase ESCO1 *  / reaction
 ENSDARG00000061052 F1QBY1 / nipblb / nipped-B homolog b (Drosophila) / NIPBL* / Q6KCD5* / Q6KC79* / Nipped-B-like protein * / NIPBL, cohesin loading factor*  / complex / reaction
 ENSDARG00000098272 nipbla / nipped-B homolog a (Drosophila) / NIPBL* / Q6KC79* / Q6KCD5* / Nipped-B-like protein * / NIPBL, cohesin loading factor*  / complex / reaction
 ENSDARG00000098897 pds5b / PDS5 cohesin associated factor B / Q4VA53* / Q9NTI5* / Mus musculus PDS5 cohesin associated factor B (Pds5b), transcript variant 2, mRNA.*  / reaction
 ENSDARG00000035655 rad21b / RAD21 cohesin complex component b / RAD21* / Q61550* / O60216* / Double-strand-break repair * / RAD21 cohesin complex component*  / reaction
 ENSDARG00000055022 pds5a / PDS5 cohesin associated factor A / Q29RF7*  / reaction






 

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