ENSDARG00000063417


Danio rerio

Features
Gene ID: ENSDARG00000063417
  
Biological name :erf
  
Synonyms : erf / Ets2 repressor factor
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 6141913
Gene end: 6193448
  
Corresponding Affymetrix probe sets: Dr.13342.1.A1_at (Zebrafish Array)   NM_001044927_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115587
Ensembl peptide - ENSDARP00000087088
Ensembl peptide - ENSDARP00000125844
NCBI entrez gene - 560416     See in Manteia.
RefSeq - NM_001044927
RefSeq - XM_005159364
RefSeq Peptide - NP_001038392
swissprot - I3ISG4
swissprot - B7ZVP1
swissprot - Q1LY54
ZFIN ID - ZDB-GENE-010724-17
Ensembl - ENSDARG00000063417
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
erfl3 / Ets2 repressor factor like 3ENSDARG0000006280164
erfl1 / Ets2 repressor factor like 1 / ERF* / Gm4881* / P50548* / AC010616.1* / ETS2 repressor factor*ENSDARG0000008689224
elk1 / ELK1, member of ETS oncogene family / P19419* / P41969* / ELK1, ETS transcription factor* / ETS domain-containing protein Elk-1 *ENSDARG0000007806614
elk3 / ELK3, ETS-domain protein / P41970* / P41971* / ELK3, ETS transcription factor* / ETS domain-containing protein Elk-3 *ENSDARG0000001868813
erg / v-ets avian erythroblastosis virus E26 oncogene homolog / FLI1* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor*ENSDARG0000007730413
elk4 / ELK4, ETS-domain protein / P28324* / P41158* / ELK4, ETS transcription factor* / ETS domain-containing protein Elk-4 *ENSDARG0000007709213
fli1a / Fli-1 proto-oncogene, ETS transcription factor a / FLI1* / P26323* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor* / Friend leukemia integration 1 transcription factor *ENSDARG0000005463213
si:ch211-265g22.4ENSDARG0000007651212
fev / A3FEM2 / FEV (ETS oncogene family)ENSDARG0000000924211
fli1b / Fli-1 proto-oncogene, ETS transcription factor bENSDARG0000004008011
ets2 / v-ets avian erythroblastosis virus E26 oncogene homolog 2 / ETS1* / P14921* / P27577* / Protein C-ets-1 * / ETS proto-oncogene 1, transcription factor*ENSDARG0000010398010
etv1 / ets variant 1ENSDARG000001019599
etv4 / ets variant 4 / P28322* / P43268* / ETS translocation variant 4 *ENSDARG000000183039
etv5a / ets variant 5a / ETV1* / P41164* / P50549* / ETS variant 1* / ETS translocation variant 1 *ENSDARG000000697639
gabpa / GA binding protein transcription factor, alpha subunit / Q00422* / Q06546* / GA-binding protein alpha chain *ENSDARG000000692899
etv2 / ets variant 2 / O00321* / P41163* / ETS translocation variant 2 *ENSDARG000000538689
etv5b / ets variant 5bENSDARG000000445118
CABZ01069595.1 / ELK4* / P28324* / ELK4, ETS transcription factor*ENSDARG000000244311


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR032925  ETS domain-containing transcription factor ERF


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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