ENSDARG00000069289


Danio rerio

Features
Gene ID: ENSDARG00000069289
  
Biological name :gabpa
  
Synonyms : GA binding protein transcription factor, alpha subunit / gabpa
  
Possible biological names infered from orthology : GA-binding protein alpha chain / Q00422 / Q06546
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 35014513
Gene end: 35026608
  
Corresponding Affymetrix probe sets: Dr.10202.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000150776
Ensembl peptide - ENSDARP00000154460
Ensembl peptide - ENSDARP00000091473
Ensembl peptide - ENSDARP00000091474
Ensembl peptide - ENSDARP00000118644
NCBI entrez gene - 58110     See in Manteia.
RefSeq - NM_131587
RefSeq - NM_001328412
RefSeq Peptide - NP_001315341
RefSeq Peptide - NP_571662
swissprot - Q9I9E8
swissprot - B0V0E2
ZFIN ID - ZDB-GENE-011010-2
Ensembl - ENSDARG00000069289
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABPAENSGALG00000015763Gallus gallus
 GABPAENSG00000154727Homo sapiens
 GabpaENSMUSG00000008976Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ets2 / v-ets avian erythroblastosis virus E26 oncogene homolog 2 / ETS1* / P14921* / P27577* / Protein C-ets-1 * / ETS proto-oncogene 1, transcription factor*ENSDARG0000010398024
fli1a / Fli-1 proto-oncogene, ETS transcription factor a / FLI1* / P26323* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor* / Friend leukemia integration 1 transcription factor *ENSDARG0000005463223
fli1b / Fli-1 proto-oncogene, ETS transcription factor bENSDARG0000004008022
erg / v-ets avian erythroblastosis virus E26 oncogene homolog / FLI1* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor*ENSDARG0000007730422
etv4 / ets variant 4 / P28322* / P43268* / ETS translocation variant 4 *ENSDARG0000001830317
etv5a / ets variant 5a / ETV1* / P41164* / P50549* / ETS variant 1* / ETS translocation variant 1 *ENSDARG0000006976317
etv2 / ets variant 2 / O00321* / P41163* / ETS translocation variant 2 *ENSDARG0000005386816
fev / A3FEM2 / FEV (ETS oncogene family)ENSDARG0000000924215
etv5b / ets variant 5bENSDARG0000004451115
etv1 / ets variant 1ENSDARG0000010195915
erf / Ets2 repressor factorENSDARG0000006341713
elk3 / ELK3, ETS-domain protein / P41970* / P41971* / ELK3, ETS transcription factor* / ETS domain-containing protein Elk-3 *ENSDARG0000001868813
erfl1 / Ets2 repressor factor like 1 / ERF* / Gm4881* / P50548* / AC010616.1* / ETS2 repressor factor*ENSDARG0000008689213
elk1 / ELK1, member of ETS oncogene family / P19419* / P41969* / ELK1, ETS transcription factor* / ETS domain-containing protein Elk-1 *ENSDARG0000007806613
erfl3 / Ets2 repressor factor like 3ENSDARG0000006280113
elk4 / ELK4, ETS-domain protein / P28324* / P41158* / ELK4, ETS transcription factor* / ETS domain-containing protein Elk-4 *ENSDARG0000007709212
si:ch211-265g22.4ENSDARG0000007651211
CABZ01069595.1 / ELK4* / P28324* / ELK4, ETS transcription factor*ENSDARG000000244316


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR003118  Pointed domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR016312  Transcription factor, GA-binding, alpha subunit
 IPR024668  GA-binding protein alpha subunit, N-terminal
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Transcriptional activation of mitochondrial biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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