Manteia

ENSDARG00000077811

Danio rerio

Features

Gene ID:	ENSDARG00000077811

Biological name :	sox11a

Synonyms :	sox11a / SRY (sex determining region Y)-box 11a

Possible biological names infered from orthology :	P35716 / Q7M6Y2 / SOX11 / SRY-box 11 / Transcription factor SOX-11

Species:	Danio rerio

Chr. number:	17
Strand:	-1
Band:
Gene start:	35878544
Gene end:	35881841

Corresponding Affymetrix probe sets:	Dr.4763.1.S1_at (Zebrafish Array) Dr.4763.1.S2_at (Zebrafish Array) Dr.4763.3.S1_at (Zebrafish Array) NM_131336_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000105811 NCBI entrez gene - 30602 See in Manteia. RefSeq - NM_131336 RefSeq Peptide - NP_571411 swissprot - Q9I9C8 ZFIN ID - ZDB-GENE-980526-395 Ensembl - ENSDARG00000077811

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
SOX11	ENSG00000176887	Homo sapiens
Sox11	ENSMUSG00000063632	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
sox11b / SRY (sex determining region Y)-box 11b / SOX11* / Q7M6Y2* / P35716* / SRY-box 11* / Transcription factor SOX-11 *	ENSDARG00000095743	71
sox4a / SRY (sex determining region Y)-box 4a / SOX4* / Q06945* / Q06831* / SRY-box 4* / Transcription factor SOX-4 *	ENSDARG00000004588	43
sox12 / SRY (sex determining region Y)-box 12 / Q04890* / O15370* / SRY-box 12* / Transcription factor SOX-12 *	ENSDARG00000025847	41
sox4b / SRY (sex determining region Y)-box 4b / SOX4* / Q06945* / SRY-box 4*	ENSDARG00000098834	41
sox17 / SRY (sex determining region Y)-box 17 / Q9H6I2* / SRY-box 17*	ENSDARG00000101717	21
sox9a / SRY (sex determining region Y)-box 9a / SOX9* / Q04887* / P48436* / SRY-box 9* / Transcription factor SOX-9 *	ENSDARG00000003293	21
sox8a / SRY (sex determining region Y)-box 8a / SOX8* / P57073* / SRY-box 8*	ENSDARG00000105301	20
sox1a / Q6DGL6 / SRY (sex determining region Y)-box 1a / SOX1* / P53783* / O00570* / SRY-box 1* / Transcription factor SOX-1 *	ENSDARG00000069866	20
sox3 / Q6EJB7 / SRY (sex determining region Y)-box 3 / P41225* / SRY-box 3*	ENSDARG00000053569	20
sox1b / Q2Z1R2 / SRY (sex determining region Y)-box 1b / SOX1* / P53783* / O00570* / SRY-box 1* / Transcription factor SOX-1 *	ENSDARG00000008131	20
sox19b / SRY (sex determining region Y)-box 19b	ENSDARG00000040266	19
Q6RVD7 / sox21b / SRY (sex determining region Y)-box 21b / SOX21* / Q9Y651* / Q811W0* / SRY-box 21* / Transcription factor SOX-21 *	ENSDARG00000008540	19
sox14 / Q32PP9 / SRY (sex determining region Y)-box 14 / Q04892* / O95416* / SRY-box 14* / Transcription factor SOX-14 *	ENSDARG00000070929	19
sox7 / SRY (sex determining region Y)-box 7 / Q9BT81* / P40646* / SRY-box 7* / AC105001.2*	ENSDARG00000030125	19
sox2 / Q6P0E1 / SRY (sex determining region Y)-box 2 / P48431* / SRY-box 2*	ENSDARG00000070913	19
sox8b / SRY (sex determining region Y)-box 8b / SOX8* / P57073* / SRY-box 8*	ENSDARG00000037782	19
sox21a / SRY (sex determining region Y)-box 21a	ENSDARG00000031664	19
sox10 / SRY (sex determining region Y)-box 10 / Q04888* / P56693* / SRY-box 10* / Transcription factor SOX-10 *	ENSDARG00000077467	19
P47792 / sox19a / SRY (sex determining region Y)-box 19a	ENSDARG00000010770	19
sox9b / SRY (sex determining region Y)-box 9b / SOX8* / P57073* / SRY-box 8*	ENSDARG00000043923	18

Protein motifs (from Interpro)

Interpro ID	Name
IPR009071	High mobility group box domain
IPR017386	Transcription factor SOX-11/4
IPR029551	Transcription factor SOX-11

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0002088	lens development in camera-type eye	IGI
biological_process	GO:0006351	transcription, DNA-templated	IEA
biological_process	GO:0006355	regulation of transcription, DNA-templated	IEA
biological_process	GO:0007420	brain development	IMP
biological_process	GO:0045879	negative regulation of smoothened signaling pathway	IGI
biological_process	GO:0046548	retinal rod cell development	IGI
biological_process	GO:0048593	camera-type eye morphogenesis	IGI
biological_process	GO:0061386	closure of optic fissure	IGI
cellular_component	GO:0005634	nucleus	IEA
molecular_function	GO:0003677	DNA binding	IEA
molecular_function	GO:0003700	DNA-binding transcription factor activity	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000008	brain	brain cell apoptotic , abnormal	Show
ZFA:0001094	whole organism	whole organism lethal (sensu genetics) , abnormal	Show
ZFA:0001114	head	head decreased size , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr