ENSDARG00000030125


Danio rerio

Features
Gene ID: ENSDARG00000030125
  
Biological name :sox7
  
Synonyms : sox7 / SRY (sex determining region Y)-box 7
  
Possible biological names infered from orthology : AC105001.2 / P40646 / Q9BT81 / SRY-box 7
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 19066596
Gene end: 19080593
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000108471
Ensembl peptide - ENSDARP00000146439
Ensembl peptide - ENSDARP00000147155
NCBI entrez gene - 394203     See in Manteia.
swissprot - Q6TEN5
ZFIN ID - ZDB-GENE-040109-4
Ensembl - ENSDARG00000030125
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041296Gallus gallus
 AC105001.2ENSG00000258724Homo sapiens
 SOX7ENSG00000171056Homo sapiens
 Sox7ENSMUSG00000063060Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sox18 / SRY (sex determining region Y)-box 18 / P43680* / P35713* / SRY-box 18* / Transcription factor SOX-18 *ENSDARG0000005859839
sox17 / SRY (sex determining region Y)-box 17 / Q9H6I2* / SRY-box 17*ENSDARG0000010171734
sox9b / SRY (sex determining region Y)-box 9b / SOX8* / P57073* / SRY-box 8*ENSDARG0000004392324
sox9a / SRY (sex determining region Y)-box 9a / SOX9* / Q04887* / P48436* / SRY-box 9* / Transcription factor SOX-9 *ENSDARG0000000329323
sox8a / SRY (sex determining region Y)-box 8a / SOX8* / P57073* / SRY-box 8*ENSDARG0000010530122
sox32 / SRY (sex determining region Y)-box 32 / SOX17* / Q9H6I2* / SRY-box 17*ENSDARG0000010059122
sox10 / SRY (sex determining region Y)-box 10 / Q04888* / P56693* / SRY-box 10* / Transcription factor SOX-10 *ENSDARG0000007746722
sox8b / SRY (sex determining region Y)-box 8b / SOX8* / P57073* / SRY-box 8*ENSDARG0000003778221
sox4b / SRY (sex determining region Y)-box 4b / SOX4* / Q06945* / SRY-box 4*ENSDARG0000009883419
sox11b / SRY (sex determining region Y)-box 11b / SOX11* / Q7M6Y2* / P35716* / SRY-box 11* / Transcription factor SOX-11 *ENSDARG0000009574319
sox1a / Q6DGL6 / SRY (sex determining region Y)-box 1a / SOX1* / P53783* / O00570* / SRY-box 1* / Transcription factor SOX-1 *ENSDARG0000006986618
sox4a / SRY (sex determining region Y)-box 4a / SOX4* / Q06945* / Q06831* / SRY-box 4* / Transcription factor SOX-4 *ENSDARG0000000458818
sox1b / Q2Z1R2 / SRY (sex determining region Y)-box 1b / SOX1* / P53783* / O00570* / SRY-box 1* / Transcription factor SOX-1 *ENSDARG0000000813118
sox3 / Q6EJB7 / SRY (sex determining region Y)-box 3 / P41225* / SRY-box 3*ENSDARG0000005356918
sox12 / SRY (sex determining region Y)-box 12 / Q04890* / O15370* / SRY-box 12* / Transcription factor SOX-12 *ENSDARG0000002584717
sox11a / SRY (sex determining region Y)-box 11a / SOX11* / Q7M6Y2* / P35716* / SRY-box 11* / Transcription factor SOX-11 *ENSDARG0000007781117
sox2 / Q6P0E1 / SRY (sex determining region Y)-box 2 / P48431* / SRY-box 2*ENSDARG0000007091317
sox14 / Q32PP9 / SRY (sex determining region Y)-box 14 / Q04892* / O95416* / SRY-box 14* / Transcription factor SOX-14 *ENSDARG0000007092916
sox19b / SRY (sex determining region Y)-box 19bENSDARG0000004026616
P47792 / sox19a / SRY (sex determining region Y)-box 19aENSDARG0000001077016


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR021934  Sox, C-terminal
 IPR033392  Sox 7/17/18, central domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0001570 vasculogenesis IGI
 biological_processGO:0048793 pronephros development IMP
 biological_processGO:0060840 artery development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta malformed , abnormal
dorsal aorta lateral region in contact with common cardinal vein , abnormal
dorsal aorta lateral region in contact with primary head sinus , abnormal
dorsal aorta fused with posterior cardinal vein , abnormal
dorsal aorta blood vessel development process quality , abnormal
dorsal aorta blood vessel endothelium decreased amount , abnormal
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 ZFA:0000477 posterior cardinal vein posterior cardinal vein blood vessel development process quality , abnormal
posterior cardinal vein blood vessel endothelium decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
whole organism increased amount , abnormal
Show

 ZFA:0001115 trunk trunk blood circulation decreased occurrence , abnormal
trunk blood circulation arrested , abnormal
trunk blood circulation absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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