ENSG00000069011


Homo sapiens

Features
Gene ID: ENSG00000069011
  
Biological name :PITX1
  
Synonyms : P78337 / paired like homeodomain 1 / PITX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.1
Gene start: 135027735
Gene end: 135034813
  
Corresponding Affymetrix probe sets: 1569561_at (Human Genome U133 Plus 2.0 Array)   208502_s_at (Human Genome U133 Plus 2.0 Array)   209587_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422908
Ensembl peptide - ENSP00000451199
Ensembl peptide - ENSP00000427542
Ensembl peptide - ENSP00000423624
Ensembl peptide - ENSP00000265340
NCBI entrez gene - 5307     See in Manteia.
OMIM - 602149
RefSeq - NM_002653
RefSeq Peptide - NP_002644
swissprot - P78337
swissprot - D6R9U1
swissprot - X5D9A5
swissprot - D6R955
swissprot - H0YJC8
Ensembl - ENSG00000069011
  
Related genetic diseases (OMIM): 119800 - Clubfoot, congenital, with or without deficiency of long bones and/or mirror-image polydactyly, 119800
  186550 - Liebenberg syndrome, 186550

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pitx1ENSDARG00000116608Danio rerio
 PITX1ENSGALG00000030237Gallus gallus
 Pitx1ENSMUSG00000021506Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PITX2 / Q99697 / paired like homeodomain 2ENSG0000016409363
PITX3 / O75364 / paired like homeodomain 3ENSG0000010785950
DMBX1 / Q8NFW5 / diencephalon/mesencephalon homeobox 1ENSG0000019758726
OTX2 / P32243 / orthodenticle homeobox 2ENSG0000016558824
OTX1 / P32242 / orthodenticle homeobox 1ENSG0000011550723
PRRX2 / Q99811 / paired related homeobox 2ENSG0000016715723
PRRX1 / P54821 / paired related homeobox 1ENSG0000011613222
CRX / O43186 / cone-rod homeoboxENSG0000010539221
PROP1 / O75360 / PROP paired-like homeobox 1ENSG0000017532518
MIXL1 / Q9H2W2 / Mix paired-like homeoboxENSG0000018515517
GSC2 / O15499 / goosecoid homeobox 2ENSG0000006351516
GSC / P56915 / goosecoid homeoboxENSG0000013393715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR016233  Homeobox protein Pitx/unc30
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0014707 branchiomeric skeletal muscle development IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048625 myoblast fate commitment IEA
 biological_processGO:0051216 cartilage development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IPI
 molecular_functionGO:0001190 transcriptional activator activity, RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0001156 Brachydactyly 
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 HP:0001191 Abnormality of the carpal bones "An abnormality affecting the carpal bones of the wrist (scaphoid, lunate, triquetral, pisiform, trapezium, trapezoid, capitate, hamate)." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001233 2-3 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of fingers two and three." [HPO:sdoelken]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0002987 Elbow contractures 
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 HP:0002997 Abnormality of the ulna "Ab abnormality of the ulna bone of the forearm." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003063 Abnormality of the humerus "An abnormality of the humerus (i.e., upper arm bone)." [HPO:curators]
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 HP:0003065 Patellar hypoplasia "Underdevelopment of the patella." [HPO:curators]
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 HP:0003829 Incomplete penetrance 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0006190 Radially deviated wrists 
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0009183 Joint contractures of the 5th finger "Chronic loss of joint motion in the 5th finger due to structural changes in non-bony tissue. The term camptodactyly of the 5th finger is used if the distal and/or proximal interphalangeal joints are affected." [HPO:curators]
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 HP:0009832 Abnormality of the distal phalanges of the hand 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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