ENSG00000164093


Homo sapiens

Features
Gene ID: ENSG00000164093
  
Biological name :PITX2
  
Synonyms : paired like homeodomain 2 / PITX2 / Q99697
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q25
Gene start: 110617423
Gene end: 110642123
  
Corresponding Affymetrix probe sets: 207558_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475617
Ensembl peptide - ENSP00000495061
Ensembl peptide - ENSP00000484909
Ensembl peptide - ENSP00000484763
Ensembl peptide - ENSP00000481951
Ensembl peptide - ENSP00000304169
Ensembl peptide - ENSP00000347004
Ensembl peptide - ENSP00000347192
Ensembl peptide - ENSP00000378095
Ensembl peptide - ENSP00000378097
Ensembl peptide - ENSP00000421454
Ensembl peptide - ENSP00000424142
NCBI entrez gene - 5308     See in Manteia.
OMIM - 601542
RefSeq - XM_011532027
RefSeq - NM_000325
RefSeq - NM_001204397
RefSeq - NM_001204398
RefSeq - NM_001204399
RefSeq - NM_153426
RefSeq - NM_153427
RefSeq Peptide - NP_001191326
RefSeq Peptide - NP_001191328
RefSeq Peptide - NP_700475
RefSeq Peptide - NP_700476
RefSeq Peptide - NP_001191327
RefSeq Peptide - NP_000316
swissprot - Q99697
swissprot - D6RFI4
swissprot - A8MUL9
swissprot - D6RBG8
swissprot - U3KQ81
Ensembl - ENSG00000164093
  
Related genetic diseases (OMIM): 137600 - Anterior segment dysgenesis 4, 137600
  180500 - Axenfeld-Rieger syndrome, type 1, 180500
  180550 - Ring dermoid of cornea, 180550

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pitx2ENSDARG00000036194Danio rerio
 PITX2ENSGALG00000042492Gallus gallus
 Pitx2ENSMUSG00000028023Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PITX1 / P78337 / paired like homeodomain 1ENSG0000006901161
PITX3 / O75364 / paired like homeodomain 3ENSG0000010785953
DMBX1 / Q8NFW5 / diencephalon/mesencephalon homeobox 1ENSG0000019758724
PRRX2 / Q99811 / paired related homeobox 2ENSG0000016715723
OTX2 / P32243 / orthodenticle homeobox 2ENSG0000016558822
PRRX1 / P54821 / paired related homeobox 1ENSG0000011613222
CRX / O43186 / cone-rod homeoboxENSG0000010539221
OTX1 / P32242 / orthodenticle homeobox 1ENSG0000011550720
GSC2 / O15499 / goosecoid homeobox 2ENSG0000006351516
PROP1 / O75360 / PROP paired-like homeobox 1ENSG0000017532516
MIXL1 / Q9H2W2 / Mix paired-like homeoboxENSG0000018515515
GSC / P56915 / goosecoid homeoboxENSG0000013393714


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR016233  Homeobox protein Pitx/unc30
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001570 vasculogenesis IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0002074 extraocular skeletal muscle development IEA
 biological_processGO:0003171 atrioventricular valve development IEA
 biological_processGO:0003253 cardiac neural crest cell migration involved in outflow tract morphogenesis ISS
 biological_processGO:0003350 pulmonary myocardium development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007368 determination of left/right symmetry ISS
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0007520 myoblast fusion IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0008585 female gonad development IEA
 biological_processGO:0009653 anatomical structure morphogenesis IEA
 biological_processGO:0009725 response to hormone IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0021763 subthalamic nucleus development IEA
 biological_processGO:0021855 hypothalamus cell migration IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0033189 response to vitamin A IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035315 hair cell differentiation IC
 biological_processGO:0035886 vascular smooth muscle cell differentiation IEA
 biological_processGO:0035993 deltoid tuberosity development IMP
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0042476 odontogenesis IMP
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:0043388 positive regulation of DNA binding IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II TAS
 biological_processGO:0048536 spleen development ISS
 biological_processGO:0048557 embryonic digestive tract morphogenesis IEA
 biological_processGO:0048738 cardiac muscle tissue development IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0055009 atrial cardiac muscle tissue morphogenesis IEA
 biological_processGO:0055015 ventricular cardiac muscle cell development IEA
 biological_processGO:0055123 digestive system development IEA
 biological_processGO:0060126 somatotropin secreting cell differentiation TAS
 biological_processGO:0060127 prolactin secreting cell differentiation TAS
 biological_processGO:0060412 ventricular septum morphogenesis IEA
 biological_processGO:0060460 left lung morphogenesis IEA
 biological_processGO:0060577 pulmonary vein morphogenesis IEA
 biological_processGO:0060578 superior vena cava morphogenesis IEA
 biological_processGO:0061031 endodermal digestive tract morphogenesis IEA
 biological_processGO:0061072 iris morphogenesis IMP
 biological_processGO:0061325 cell proliferation involved in outflow tract morphogenesis ISS
 biological_processGO:0070986 left/right axis specification ISS
 biological_processGO:2000288 positive regulation of myoblast proliferation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
TFAP2 (AP-2) family regulates transcription of other transcription factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000232 Everted lower lip 
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000481 Abnormality of the cornea "Any abnormality of the `cornea` (FMA:58238), which is the transparent tissue at the front of the eye that covers the iris, pupil, and anterior chamber." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000485 Megalocornea "An enlargement of the `cornea` (FMA:58238) with normal clarity and function. Megalocornea is diagnosed with a horizontal corneal diameter of 12 mm or more at birth or 13 mm or more after two years of age." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000502 Abnormality of the conjunctiva "An abnormality of the conjunctiva, which is a thin, sparsely vascularized transparent membrane that covers and protects the sclera (the bulbar conjunctiva), and forms the inner lining of the eyelids (the tarsal conjunctiva)." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000523 Subcapsular cataracts 
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 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
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 HP:0000558 Rieger anomaly 
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000627 Posterior embryotoxon 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000659 Peters anomaly 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0001087 Congenital glaucoma 
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 HP:0001425 Heterogeneous 
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 HP:0001510 Growth retardation 
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 HP:0001582 Loose, redundant skin 
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 HP:0001999 Facial dysmorphism 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004298 Abnormality of the abdominal wall "The presence of any abnormality affecting the abdominal wall." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007873 Abnormally prominent line of Schwalbe 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0007990 Hypoplastic iris stroma 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011483 Anterior synechiae of the anterior chamber "Adhesions between the iris and the cornea." [DDD:ncarter]
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 HP:0011493 Central opacification of the cornea "Reduced transparency of the central portion of the corneal stroma." [DDD:ncarter]
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 HP:0011500 Polycoria "Multiple pupils." [DDD:ncarter]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0031159 Thinning of Descemet membrane "A reduction in the thickness of Descemet s membrane." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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