ENSG00000116132


Homo sapiens

Features
Gene ID: ENSG00000116132
  
Biological name :PRRX1
  
Synonyms : P54821 / paired related homeobox 1 / PRRX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q24.2
Gene start: 170662728
Gene end: 170739419
  
Corresponding Affymetrix probe sets: 205991_s_at (Human Genome U133 Plus 2.0 Array)   226695_at (Human Genome U133 Plus 2.0 Array)   238852_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000239461
Ensembl peptide - ENSP00000356734
Ensembl peptide - ENSP00000450762
NCBI entrez gene - 5396     See in Manteia.
OMIM - 167420
RefSeq - XM_006711388
RefSeq - NM_006902
RefSeq - NM_022716
RefSeq Peptide - NP_008833
RefSeq Peptide - NP_073207
swissprot - P54821
swissprot - G3V2N3
Ensembl - ENSG00000116132
  
Related genetic diseases (OMIM): 202650 - Agnathia-otocephaly complex, 202650

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prrx1aENSDARG00000033971Danio rerio
 prrx1bENSDARG00000042027Danio rerio
 PRRX1ENSGALG00000003324Gallus gallus
 Prrx1ENSMUSG00000026586Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRRX2 / Q99811 / paired related homeobox 2ENSG0000016715760
PITX2 / Q99697 / paired like homeodomain 2ENSG0000016409329
PITX3 / O75364 / paired like homeodomain 3ENSG0000010785928
PITX1 / P78337 / paired like homeodomain 1ENSG0000006901128
DMBX1 / Q8NFW5 / diencephalon/mesencephalon homeobox 1ENSG0000019758727
OTX2 / P32243 / orthodenticle homeobox 2ENSG0000016558824
OTX1 / P32242 / orthodenticle homeobox 1ENSG0000011550724
CRX / O43186 / cone-rod homeoboxENSG0000010539221
MIXL1 / Q9H2W2 / Mix paired-like homeoboxENSG0000018515520
PROP1 / O75360 / PROP paired-like homeobox 1ENSG0000017532520
GSC2 / O15499 / goosecoid homeobox 2ENSG0000006351518
GSC / P56915 / goosecoid homeoboxENSG0000013393718


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0002053 positive regulation of mesenchymal cell proliferation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048664 neuron fate determination IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048844 artery morphogenesis IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0070570 regulation of neuron projection regeneration IEA
 biological_processGO:0097150 neuronal stem cell population maintenance IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000171 Microglossia 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000356 Abnormality of the outer ear "An abnormality of the outer ear, which is also known as `pinna` (FMA:56580 ) or auricle." [HPO:probinson]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001561 Polyhydramnios 
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 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
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 HP:0002098 Respiratory distress 
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 HP:0002779 Tracheomalacia 
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 HP:0003812 Phenotypic variability 
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 HP:0005349 Hypoplasia of the epiglottis 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008749 Hypoplastic larynx 
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 HP:0009914 Cyclopia "Cyclopia is a congenital abnormality in which there is only one eye. That eye is centrally placed in the area normally occupied by the root of the nose." [HPO:curators]
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 HP:0009924 Aplasia/Hypoplasia involving the nose "Underdevelopment or absence of the nose or parts thereof." [HPO:curators]
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 HP:0009939 Mandibular aplasia "Absence of the mandible." [HPO:curators]
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 HP:0011386 Narrow internal auditory canal "Reduction in diameter of the internal auditory canal." [DDD:dfitzpatrick]
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 HP:0012730 Aglossia "Absence of the tongue owing to a developmental abnormality." [HPO:probinson]
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 HP:0100596 Absent nares 
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 HP:0100663 Synotia "A congenital malformation characterized by the union or approximation of the ears in front of the neck, often accompanied by the absence or defective development of the lower jaw." [HPO:sdoelken]
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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