ENSG00000133937


Homo sapiens

Features
Gene ID: ENSG00000133937
  
Biological name :GSC
  
Synonyms : goosecoid homeobox / GSC / P56915
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q32.13
Gene start: 94768216
Gene end: 94770230
  
Corresponding Affymetrix probe sets: 1552338_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000238558
NCBI entrez gene - 145258     See in Manteia.
OMIM - 138890
RefSeq - NM_173849
RefSeq Peptide - NP_776248
swissprot - P56915
Ensembl - ENSG00000133937
  
Related genetic diseases (OMIM): 602471 - Short stature, auditory canal atresia, mandibular hypoplasia, skeletal abnormalities, 602471

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gscENSDARG00000059073Danio rerio
 GSCENSGALG00000010974Gallus gallus
 GscENSMUSG00000021095Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GSC2 / O15499 / goosecoid homeobox 2ENSG0000006351529
DMBX1 / Q8NFW5 / diencephalon/mesencephalon homeobox 1ENSG0000019758719
OTX1 / P32242 / orthodenticle homeobox 1ENSG0000011550719
PRRX2 / Q99811 / paired related homeobox 2ENSG0000016715718
PITX3 / O75364 / paired like homeodomain 3ENSG0000010785918
PITX1 / P78337 / paired like homeodomain 1ENSG0000006901118
PRRX1 / P54821 / paired related homeobox 1ENSG0000011613218
PITX2 / Q99697 / paired like homeodomain 2ENSG0000016409318
PROP1 / O75360 / PROP paired-like homeobox 1ENSG0000017532518
MIXL1 / Q9H2W2 / Mix paired-like homeoboxENSG0000018515518
CRX / O43186 / cone-rod homeoboxENSG0000010539218
OTX2 / P32243 / orthodenticle homeobox 2ENSG0000016558817


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007369 gastrulation NAS
 biological_processGO:0009653 anatomical structure morphogenesis IEA
 biological_processGO:0014036 neural crest cell fate specification IMP
 biological_processGO:0021904 dorsal/ventral neural tube patterning IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0043583 ear development IEA
 biological_processGO:0048644 muscle organ morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000601 Hypotelorism 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0001371 Contractures 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005792 Humeral hypoplasia 
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 HP:0006595 Humeroscapular synostosis "An abnormal bony union (synostosis) between the humerus and the scapula, leading to an impairment in mobility of the affected shoulder joint." [HPO:curators]
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 HP:0008785 Delayed ossification of pubic rami 
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 HP:0008905 Rhizomelic short stature 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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