ENSG00000075785


Homo sapiens

Features
Gene ID: ENSG00000075785
  
Biological name :RAB7A
  
Synonyms : P51149 / RAB7A / RAB7A, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q21.3
Gene start: 128726122
Gene end: 128814796
  
Corresponding Affymetrix probe sets: 211960_s_at (Human Genome U133 Plus 2.0 Array)   211961_s_at (Human Genome U133 Plus 2.0 Array)   217267_s_at (Human Genome U133 Plus 2.0 Array)   217268_at (Human Genome U133 Plus 2.0 Array)   223760_s_at (Human Genome U133 Plus 2.0 Array)   227602_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417155
Ensembl peptide - ENSP00000265062
Ensembl peptide - ENSP00000418955
Ensembl peptide - ENSP00000418283
Ensembl peptide - ENSP00000417978
Ensembl peptide - ENSP00000417668
Ensembl peptide - ENSP00000417189
NCBI entrez gene - 7879     See in Manteia.
OMIM - 602298
RefSeq - NM_004637
RefSeq Peptide - NP_004628
swissprot - C9J592
swissprot - C9J4V0
swissprot - C9J4S4
swissprot - C9IZZ0
swissprot - A0A158RFU6
swissprot - C9J8S3
swissprot - P51149
swissprot - C9J7D1
Ensembl - ENSG00000075785
  
Related genetic diseases (OMIM): 600882 - Charcot-Marie-Tooth disease, type 2B, 600882
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab7ENSDARG00000020497Danio rerio
 RAB7AENSGALG00000005902Gallus gallus
 Rab7ENSMUSG00000079477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB9B / Q9NP90 / RAB9B, member RAS oncogene familyENSG0000012357051
RAB9A / P51151 / RAB9A, member RAS oncogene familyENSG0000012359550
RAB7B / Q96AH8 / RAB7B, member RAS oncogene familyENSG0000027660047
RAB32 / Q13637 / RAB32, member RAS oncogene familyENSG0000011850833
RAB23 / Q9ULC3 / RAB23, member RAS oncogene familyENSG0000011221033
RAB29 / O14966 / RAB29, member RAS oncogene familyENSG0000011728032
RAB38 / P57729 / RAB38, member RAS oncogene familyENSG0000012389232


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IMP
 biological_processGO:0006622 protein targeting to lysosome IMP
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006897 endocytosis TAS
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007174 epidermal growth factor catabolic process IMP
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0015031 protein transport TAS
 biological_processGO:0016042 lipid catabolic process IEA
 biological_processGO:0019076 viral release from host cell IMP
 biological_processGO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS
 biological_processGO:0022615 protein to membrane docking IDA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045022 early endosome to late endosome transport IMP
 biological_processGO:0045453 bone resorption IEA
 biological_processGO:0045732 positive regulation of protein catabolic process IMP
 biological_processGO:0048524 positive regulation of viral process IMP
 biological_processGO:0061724 lipophagy ISS
 biological_processGO:0090382 phagosome maturation TAS
 biological_processGO:0090383 phagosome acidification IMP
 biological_processGO:0090385 phagosome-lysosome fusion IMP
 biological_processGO:1902583 multi-organism intracellular transport TAS
 biological_processGO:1903542 negative regulation of exosomal secretion IMP
 biological_processGO:1903543 positive regulation of exosomal secretion IMP
 biological_processGO:1905366 negative regulation of intralumenal vesicle formation TAS
 cellular_componentGO:0000421 autophagosome membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005811 lipid droplet ISS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0010008 endosome membrane IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030667 secretory granule membrane TAS
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0030904 retromer complex IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0032419 extrinsic component of lysosome membrane ISS
 cellular_componentGO:0033162 melanosome membrane IEA
 cellular_componentGO:0034045 phagophore assembly site membrane IEA
 cellular_componentGO:0043195 terminal bouton IEA
 cellular_componentGO:0045335 phagocytic vesicle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0097208 alveolar lamellar body IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0019003 GDP binding IDA
 molecular_functionGO:0048365 Rac GTPase binding IEA
 molecular_functionGO:1905394 retromer complex binding IMP


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation
Neutrophil degranulation
TBC/RABGAPs
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001761 Pes cavus 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001765 Hammer toes 
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 HP:0001810 Dystrophic toenails 
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 HP:0001868 Autoamputation (feet) 
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 HP:0001886 Osteomyelitis or necrosis, distal, due to sensory neuropathy (feet) 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003378 Axonal degeneration/regeneration on nerve biopsy 
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003384 Axonal atrophy on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000057608 GDI2 / P50395 / GDP dissociation inhibitor 2  / complex
 ENSG00000203668 CHML / P26374 / CHM like, Rab escort protein 2  / complex
 ENSG00000141447 Q9BXW6 / OSBPL1A / oxysterol binding protein like 1A  / complex
 ENSG00000075785 RAB7A / P51149 / RAB7A, member RAS oncogene family  / complex
 ENSG00000188419 CHM / P24386 / CHM, Rab escort protein 1  / complex
 ENSG00000203879 GDI1 / P31150 / GDP dissociation inhibitor 1  / complex
 ENSG00000164077 MON1A / Q86VX9 / MON1 homolog A, secretory trafficking associated  / reaction
 ENSG00000167705 RILP / Q96NA2 / Rab interacting lysosomal protein  / complex
 ENSG00000122674 CCZ1 / P86791 / CCZ1 homolog, vacuolar protein trafficking and biogenesis associated  / reaction






 

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