ENSG00000095464


Homo sapiens

Features
Gene ID: ENSG00000095464
  
Biological name :PDE6C
  
Synonyms : P51160 / PDE6C / phosphodiesterase 6C
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q23.33
Gene start: 93612588
Gene end: 93666010
  
Corresponding Affymetrix probe sets: 211093_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360502
NCBI entrez gene - 5146     See in Manteia.
OMIM - 600827
RefSeq - NM_006204
RefSeq - XM_017016322
RefSeq Peptide - NP_006195
swissprot - P51160
Ensembl - ENSG00000095464
  
Related genetic diseases (OMIM): 613093 - Cone dystrophy 4, 613093
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pde6cENSDARG00000100397Danio rerio
 PDE6CENSGALG00000006626Gallus gallus
 Pde6cENSMUSG00000024992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDE6B / P35913 / phosphodiesterase 6BENSG0000013325664
PDE6A / P16499 / phosphodiesterase 6AENSG0000013291564
PDE11A / Q9HCR9 / phosphodiesterase 11AENSG0000012865531
PDE5A / O76074 / phosphodiesterase 5AENSG0000013873529
PDE11A / phosphodiesterase 11AENSG0000028474126
PDE10A / Q9Y233 / phosphodiesterase 10AENSG0000011254124
PDE2A / O00408 / phosphodiesterase 2AENSG0000018664223
PDE3A / Q14432 / phosphodiesterase 3AENSG0000017257218
PDE3B / Q13370 / phosphodiesterase 3BENSG0000015227017
PDE9A / O76083 / phosphodiesterase 9AENSG0000016019115


Protein motifs (from Interpro)
Interpro ID Name
 IPR002073  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain
 IPR003018  GAF domain
 IPR003607  HD/PDEase domain
 IPR023088  3"5"-cyclic nucleotide phosphodiesterase
 IPR023174  3"5"-cyclic nucleotide phosphodiesterase, conserved site
 IPR029016  GAF-like domain superfamily
 IPR036971  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007603 phototransduction, visible light IEA
 biological_processGO:0046549 retinal cone cell development IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030553 cGMP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047555 3",5"-cyclic-GMP phosphodiesterase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000540 Hypermetropia 
Show

 HP:0000548 Cone-rod dystrophy 
Show

 HP:0000551 Abnormal color vision 
Show

 HP:0000577 Exotropia 
Show

 HP:0000603 Central scotoma 
Show

 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0007641 Secondary dyschromatopsia 
Show

 HP:0007663 Decreased central vision 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0007722 Loss of retinal pigment epithelium 
Show

 HP:0007750 Foveal hypoplasia 
Show

 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
Show

 HP:0007843 Attenuation of retinal blood vessels 
Show

 HP:0007939 Almost complete colorblindness except ability to see blue 
Show

 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr