ENSG00000132915


Homo sapiens

Features
Gene ID: ENSG00000132915
  
Biological name :PDE6A
  
Synonyms : P16499 / PDE6A / phosphodiesterase 6A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q32
Gene start: 149857955
Gene end: 149944793
  
Corresponding Affymetrix probe sets: 206623_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000255266
Ensembl peptide - ENSP00000478060
Ensembl peptide - ENSP00000482774
NCBI entrez gene - 5145     See in Manteia.
OMIM - 180071
RefSeq - XM_017009572
RefSeq - NM_000440
RefSeq - XM_011537652
RefSeq - XM_011537653
RefSeq - XM_011537654
RefSeq - XM_011537650
RefSeq - XM_011537651
RefSeq Peptide - NP_000431
swissprot - P16499
swissprot - F1T0K3
Ensembl - ENSG00000132915
  
Related genetic diseases (OMIM): 613810 - Retinitis pigmentosa 43, 613810
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pde6aENSDARG00000000380Danio rerio
 Pde6aENSMUSG00000024575Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDE6B / P35913 / phosphodiesterase 6BENSG0000013325671
PDE6C / P51160 / phosphodiesterase 6CENSG0000009546463
PDE11A / Q9HCR9 / phosphodiesterase 11AENSG0000012865530
PDE5A / O76074 / phosphodiesterase 5AENSG0000013873529
PDE11A / phosphodiesterase 11AENSG0000028474126
PDE2A / O00408 / phosphodiesterase 2AENSG0000018664224
PDE10A / Q9Y233 / phosphodiesterase 10AENSG0000011254123
PDE3A / Q14432 / phosphodiesterase 3AENSG0000017257217
PDE3B / Q13370 / phosphodiesterase 3BENSG0000015227016
PDE9A / O76083 / phosphodiesterase 9AENSG0000016019115


Protein motifs (from Interpro)
Interpro ID Name
 IPR002073  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain
 IPR003018  GAF domain
 IPR003607  HD/PDEase domain
 IPR023088  3"5"-cyclic nucleotide phosphodiesterase
 IPR023174  3"5"-cyclic nucleotide phosphodiesterase, conserved site
 IPR029016  GAF-like domain superfamily
 IPR032958  Rod cGMP-specific 3",5"-cyclic phosphodiesterase subunit alpha
 IPR036971  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007223 Wnt signaling pathway, calcium modulating pathway TAS
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0016056 rhodopsin mediated signaling pathway TAS
 biological_processGO:0022400 regulation of rhodopsin mediated signaling pathway TAS
 biological_processGO:0046037 GMP metabolic process IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IMP
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0097381 photoreceptor disc membrane TAS
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047555 3",5"-cyclic-GMP phosphodiesterase activity IEA


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
Ca2+ pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000543 Pale optic disks 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000133256 PDE6B / P35913 / phosphodiesterase 6B  / complex
 ENSG00000114349 GNAT1 / P11488 / G protein subunit alpha transducin 1  / reaction / complex
 ENSG00000185527 PDE6G / P18545 / phosphodiesterase 6G  / complex
 ENSG00000134183 GNAT2 / P19087 / G protein subunit alpha transducin 2  / complex / reaction






 

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