ENSG00000109738


Homo sapiens

Features
Gene ID: ENSG00000109738
  
Biological name :GLRB
  
Synonyms : GLRB / glycine receptor beta / P48167
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q32.1
Gene start: 157076057
Gene end: 157172090
  
Corresponding Affymetrix probe sets: 205279_s_at (Human Genome U133 Plus 2.0 Array)   205280_at (Human Genome U133 Plus 2.0 Array)   244680_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427186
Ensembl peptide - ENSP00000422039
Ensembl peptide - ENSP00000441873
Ensembl peptide - ENSP00000425433
Ensembl peptide - ENSP00000264428
Ensembl peptide - ENSP00000421044
NCBI entrez gene - 2743     See in Manteia.
OMIM - 138492
RefSeq - XM_017008034
RefSeq - XM_017008035
RefSeq - NM_000824
RefSeq - NM_001166060
RefSeq - NM_001166061
RefSeq Peptide - NP_000815
RefSeq Peptide - NP_001159532
RefSeq Peptide - NP_001159533
swissprot - P48167
swissprot - D6RD86
swissprot - D6R9Y9
Ensembl - ENSG00000109738
  
Related genetic diseases (OMIM): 614619 - Hyperekplexia 2, 614619
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 glrbaENSDARG00000052782Danio rerio
 glrbbENSDARG00000052769Danio rerio
 GLRBENSGALG00000009395Gallus gallus
 GlrbENSMUSG00000028020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GLRA3 / O75311 / glycine receptor alpha 3ENSG0000014545144
GLRA2 / P23416 / glycine receptor alpha 2ENSG0000010195844
GLRA1 / P23415 / glycine receptor alpha 1ENSG0000014588841
GLRA4 / Q5JXX5 / glycine receptor alpha 4ENSG0000018882839
GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunitENSG0000016328831
GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunitENSG0000014586430
GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunitENSG0000016620630
GABRR2 / P28476 / gamma-aminobutyric acid type A receptor rho2 subunitENSG0000011188629
GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunitENSG0000026808928
GABRR1 / P24046 / gamma-aminobutyric acid type A receptor rho1 subunitENSG0000014627628
A8MPY1 / GABRR3 / gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)ENSG0000018318527
GABRD / O14764 / gamma-aminobutyric acid type A receptor delta subunitENSG0000018773026
GABRP / O00591 / gamma-aminobutyric acid type A receptor pi subunitENSG0000009475526


Protein motifs (from Interpro)
Interpro ID Name
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR008060  Glycine receptor beta
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001964 startle response IMP
 biological_processGO:0006811 ion transport IDA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007218 neuropeptide signaling pathway IDA
 biological_processGO:0007268 chemical synaptic transmission IMP
 biological_processGO:0007340 acrosome reaction IEA
 biological_processGO:0007399 nervous system development IMP
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0042391 regulation of membrane potential IEA
 biological_processGO:0043200 response to amino acid IBA
 biological_processGO:0050905 neuromuscular process IEA
 biological_processGO:0051291 protein heterooligomerization IEA
 biological_processGO:0060012 synaptic transmission, glycinergic IBA
 biological_processGO:0060013 righting reflex IEA
 biological_processGO:0060079 excitatory postsynaptic potential IEA
 biological_processGO:0097112 gamma-aminobutyric acid receptor clustering IEA
 biological_processGO:1902476 chloride transmembrane transport IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016935 glycine-gated chloride channel complex IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0098982 GABA-ergic synapse IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008144 drug binding IEA
 molecular_functionGO:0016594 glycine binding IMP
 molecular_functionGO:0016933 extracellularly glycine-gated ion channel activity IMP
 molecular_functionGO:0016934 extracellularly glycine-gated chloride channel activity IDA


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000565 Esotropia 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002267 Exaggerated startle response "An exaggerated startle reaction in response to a sudden unexpected visual or acoustic stimulus, or a quick movement near the face." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0003552 Muscle stiffness 
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 HP:0100633 Esophagitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101958 GLRA2 / P23416 / glycine receptor alpha 2  / complex
 ENSG00000145451 GLRA3 / O75311 / glycine receptor alpha 3  / complex
 ENSG00000145888 GLRA1 / P23415 / glycine receptor alpha 1  / complex






 

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