ENSG00000145888


Homo sapiens

Features
Gene ID: ENSG00000145888
  
Biological name :GLRA1
  
Synonyms : GLRA1 / glycine receptor alpha 1 / P23415
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.1
Gene start: 151822513
Gene end: 151924842
  
Corresponding Affymetrix probe sets: 207972_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430595
Ensembl peptide - ENSP00000274576
Ensembl peptide - ENSP00000411593
NCBI entrez gene - 2741     See in Manteia.
OMIM - 138491
RefSeq - XM_017009349
RefSeq - NM_000171
RefSeq - NM_001146040
RefSeq - NM_001292000
RefSeq Peptide - NP_000162
RefSeq Peptide - NP_001139512
RefSeq Peptide - NP_001278929
swissprot - P23415
swissprot - E5RJ70
Ensembl - ENSG00000145888
  
Related genetic diseases (OMIM): 149400 - Hyperekplexia 1, 149400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 glra1ENSDARG00000012019Danio rerio
 GLRA1ENSGALG00000004134Gallus gallus
 Glra1ENSMUSG00000000263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GLRA3 / O75311 / glycine receptor alpha 3ENSG0000014545182
GLRA2 / P23416 / glycine receptor alpha 2ENSG0000010195874
GLRA4 / Q5JXX5 / glycine receptor alpha 4ENSG0000018882867
GLRB / P48167 / glycine receptor betaENSG0000010973844
GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunitENSG0000016328836
GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunitENSG0000016620635
GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunitENSG0000014586435
GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunitENSG0000026808933
GABRD / O14764 / gamma-aminobutyric acid type A receptor delta subunitENSG0000018773033
GABRR1 / P24046 / gamma-aminobutyric acid type A receptor rho1 subunitENSG0000014627632
GABRR2 / P28476 / gamma-aminobutyric acid type A receptor rho2 subunitENSG0000011188632
A8MPY1 / GABRR3 / gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)ENSG0000018318530
GABRP / O00591 / gamma-aminobutyric acid type A receptor pi subunitENSG0000009475530


Protein motifs (from Interpro)
Interpro ID Name
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR008127  Glycine receptor alpha
 IPR008128  Glycine receptor alpha1
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential IEA
 biological_processGO:0001964 startle response IMP
 biological_processGO:0002087 regulation of respiratory gaseous exchange by neurological system process IEA
 biological_processGO:0006811 ion transport IDA
 biological_processGO:0006820 anion transport IEA
 biological_processGO:0006821 chloride transport IDA
 biological_processGO:0006936 muscle contraction IMP
 biological_processGO:0007218 neuropeptide signaling pathway IDA
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0007340 acrosome reaction IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0042391 regulation of membrane potential IEA
 biological_processGO:0043576 regulation of respiratory gaseous exchange IEA
 biological_processGO:0050884 neuromuscular process controlling posture IEA
 biological_processGO:0050905 neuromuscular process IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051291 protein heterooligomerization IEA
 biological_processGO:0051970 negative regulation of transmission of nerve impulse IMP
 biological_processGO:0060012 synaptic transmission, glycinergic IEA
 biological_processGO:0060013 righting reflex IEA
 biological_processGO:0060079 excitatory postsynaptic potential IEA
 biological_processGO:0060080 inhibitory postsynaptic potential IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IDA
 biological_processGO:0071294 cellular response to zinc ion IDA
 biological_processGO:0071361 cellular response to ethanol IDA
 biological_processGO:0097305 response to alcohol IEA
 biological_processGO:1902476 chloride transmembrane transport IDA
 biological_processGO:2000344 positive regulation of acrosome reaction IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IMP
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0060077 inhibitory synapse IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IMP
 molecular_functionGO:0016594 glycine binding IDA
 molecular_functionGO:0016933 extracellularly glycine-gated ion channel activity IEA
 molecular_functionGO:0016934 extracellularly glycine-gated chloride channel activity IMP
 molecular_functionGO:0022824 transmitter-gated ion channel activity IEA
 molecular_functionGO:0030977 taurine binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002267 Exaggerated startle response "An exaggerated startle reaction in response to a sudden unexpected visual or acoustic stimulus, or a quick movement near the face." [HPO:curators]
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 HP:0002359 Frequent falls 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002375 Hypokinesia 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002835 Aspiration 
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 HP:0003552 Muscle stiffness 
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 HP:0003593 Early onset 
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 HP:0100633 Esophagitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000109738 GLRB / P48167 / glycine receptor beta  / complex






 

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