ENSG00000163288


Homo sapiens

Features
Gene ID: ENSG00000163288
  
Biological name :GABRB1
  
Synonyms : GABRB1 / gamma-aminobutyric acid type A receptor beta1 subunit / P18505
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: p12
Gene start: 46993723
Gene end: 47426444
  
Corresponding Affymetrix probe sets: 207010_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000426753
Ensembl peptide - ENSP00000426766
Ensembl peptide - ENSP00000295454
NCBI entrez gene - 2560     See in Manteia.
OMIM - 137190
RefSeq - NM_000812
RefSeq Peptide - NP_000803
swissprot - D6REM0
swissprot - P18505
swissprot - X5DNL6
Ensembl - ENSG00000163288
  
Related genetic diseases (OMIM): 617153 - Epileptic encephalopathy, early infantile, 45, 617153
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gabrb1ENSDARG00000076127Danio rerio
 Gabrb1ENSMUSG00000029212Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunitENSG0000014586479
GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunitENSG0000016620676
GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunitENSG0000026808943
GABRD / O14764 / gamma-aminobutyric acid type A receptor delta subunitENSG0000018773037
GABRR1 / P24046 / gamma-aminobutyric acid type A receptor rho1 subunitENSG0000014627637
GABRP / O00591 / gamma-aminobutyric acid type A receptor pi subunitENSG0000009475536
GABRR2 / P28476 / gamma-aminobutyric acid type A receptor rho2 subunitENSG0000011188636
GLRA3 / O75311 / glycine receptor alpha 3ENSG0000014545135
GLRA1 / P23415 / glycine receptor alpha 1ENSG0000014588835
A8MPY1 / GABRR3 / gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)ENSG0000018318535
GLRA2 / P23416 / glycine receptor alpha 2ENSG0000010195834
GLRB / P48167 / glycine receptor betaENSG0000010973832
GLRA4 / Q5JXX5 / glycine receptor alpha 4ENSG0000018882832


Protein motifs (from Interpro)
Interpro ID Name
 IPR002289  Gamma-aminobutyric-acid A receptor, beta subunit
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport ISS
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway IMP
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0015698 inorganic anion transport IEA
 biological_processGO:0021954 central nervous system neuron development IEA
 biological_processGO:0032570 response to progesterone IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0042698 ovulation cycle IEA
 biological_processGO:0071420 cellular response to histamine ISS
 biological_processGO:1902476 chloride transmembrane transport IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0043235 receptor complex IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:1902711 GABA-A receptor complex ISS
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0004890 GABA-A receptor activity ISS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005253 anion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0015276 ligand-gated ion channel activity ISS
 molecular_functionGO:0022851 GABA-gated chloride ion channel activity IMP
 molecular_functionGO:0050811 GABA receptor binding IEA


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission
GABA A receptor activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000163288 GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunit  / complex
 ENSG00000166206 GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunit  / complex
 ENSG00000145864 GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunit  / complex
 ENSG00000182256 GABRG3 / Q99928 / gamma-aminobutyric acid type A receptor gamma3 subunit  / complex
 ENSG00000156642 NPTN / Q9Y639 / neuroplastin  / reaction / complex
 ENSG00000113327 GABRG2 / P18507 / gamma-aminobutyric acid type A receptor gamma2 subunit  / complex
 ENSG00000268089 GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunit  / complex






 

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