ENSG00000113327


Homo sapiens

Features
Gene ID: ENSG00000113327
  
Biological name :GABRG2
  
Synonyms : GABRG2 / gamma-aminobutyric acid type A receptor gamma2 subunit / P18507
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q34
Gene start: 162000057
Gene end: 162162977
  
Corresponding Affymetrix probe sets: 1568612_at (Human Genome U133 Plus 2.0 Array)   206849_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410732
Ensembl peptide - ENSP00000354651
Ensembl peptide - ENSP00000430124
Ensembl peptide - ENSP00000493461
Ensembl peptide - ENSP00000492869
Ensembl peptide - ENSP00000492659
Ensembl peptide - ENSP00000492581
Ensembl peptide - ENSP00000492545
Ensembl peptide - ENSP00000492329
Ensembl peptide - ENSP00000492293
Ensembl peptide - ENSP00000492125
Ensembl peptide - ENSP00000492096
Ensembl peptide - ENSP00000491958
Ensembl peptide - ENSP00000491909
Ensembl peptide - ENSP00000491763
Ensembl peptide - ENSP00000491621
Ensembl peptide - ENSP00000491582
Ensembl peptide - ENSP00000491557
Ensembl peptide - ENSP00000491245
Ensembl peptide - ENSP00000491240
Ensembl peptide - ENSP00000430732
Ensembl peptide - ENSP00000349000
NCBI entrez gene - 2566     See in Manteia.
OMIM - 137164
RefSeq - NM_000816
RefSeq - NM_198903
RefSeq - NM_198904
RefSeq Peptide - NP_944493
RefSeq Peptide - NP_944494
RefSeq Peptide - NP_000807
swissprot - A0A1X7SBS5
swissprot - A0A1W2PSF4
swissprot - A0A1W2PRY3
swissprot - A0A1W2PRU1
swissprot - A0A1W2PRN4
swissprot - A0A1W2PRM8
swissprot - A0A1W2PR49
swissprot - A0A1W2PQX1
swissprot - A0A1W2PQR9
swissprot - A0A1W2PQA6
swissprot - A0A1W2PQ81
swissprot - A0A1W2PPS4
swissprot - A0A1W2PPN5
swissprot - A0A1W2PP56
swissprot - P18507
swissprot - E5RIG3
swissprot - A8MWU7
swissprot - E5RGJ0
swissprot - A0A286YFI6
swissprot - A0A1X7SBZ8
Ensembl - ENSG00000113327
  
Related genetic diseases (OMIM): 607681 - {Epilepsy, childhood absence, susceptibility to, 2}, 607681
  611277 - Epilepsy, generalized, with febrile seizures plus, type 3, 611277
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gabrg2ENSDARG00000053665Danio rerio
 GABRG2ENSGALG00000038042Gallus gallus
 Gabrg2ENSMUSG00000020436Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GABRG1 / Q8N1C3 / gamma-aminobutyric acid type A receptor gamma1 subunitENSG0000016328567
GABRG3 / Q99928 / gamma-aminobutyric acid type A receptor gamma3 subunitENSG0000018225660
GABRA6 / Q16445 / gamma-aminobutyric acid type A receptor alpha6 subunitENSG0000014586339
GABRE / P78334 / gamma-aminobutyric acid type A receptor epsilon subunitENSG0000010228739
GABRA4 / P48169 / gamma-aminobutyric acid type A receptor alpha4 subunitENSG0000010915839
GABRA1 / P14867 / gamma-aminobutyric acid type A receptor alpha1 subunitENSG0000002235538
GABRA5 / P31644 / gamma-aminobutyric acid type A receptor alpha5 subunitENSG0000018629737
GABRA3 / P34903 / gamma-aminobutyric acid type A receptor alpha3 subunitENSG0000001167737
GABRA2 / P47869 / gamma-aminobutyric acid type A receptor alpha2 subunitENSG0000015183437


Protein motifs (from Interpro)
Interpro ID Name
 IPR001390  Gamma-aminobutyric-acid A receptor, alpha subunit
 IPR005437  Gamma-aminobutyric-acid A receptor, gamma subunit
 IPR005439  Gamma-aminobutyric-acid A receptor, gamma 2 subunit
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway IEA
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0030534 adult behavior IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0051932 synaptic transmission, GABAergic ISS
 biological_processGO:0071420 cellular response to histamine IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032590 dendrite membrane ISS
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:1902711 GABA-A receptor complex IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0004890 GABA-A receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008503 benzodiazepine receptor activity TAS


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission
GABA A receptor activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002266 Focal clonic seizures 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000156642 NPTN / Q9Y639 / neuroplastin  / reaction / complex
 ENSG00000166206 GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunit  / complex
 ENSG00000268089 GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunit  / complex
 ENSG00000145864 GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunit  / complex
 ENSG00000163288 GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunit  / complex






 

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contact: otassy@igbmc.fr