ENSG00000166206


Homo sapiens

Features
Gene ID: ENSG00000166206
  
Biological name :GABRB3
  
Synonyms : GABRB3 / gamma-aminobutyric acid type A receptor beta3 subunit / P28472
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q12
Gene start: 26543546
Gene end: 26939539
  
Corresponding Affymetrix probe sets: 1561316_at (Human Genome U133 Plus 2.0 Array)   1569689_s_at (Human Genome U133 Plus 2.0 Array)   205850_s_at (Human Genome U133 Plus 2.0 Array)   227690_at (Human Genome U133 Plus 2.0 Array)   227830_at (Human Genome U133 Plus 2.0 Array)   229724_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489768
Ensembl peptide - ENSP00000486819
Ensembl peptide - ENSP00000489940
Ensembl peptide - ENSP00000490678
Ensembl peptide - ENSP00000299267
Ensembl peptide - ENSP00000308725
Ensembl peptide - ENSP00000383049
Ensembl peptide - ENSP00000439169
Ensembl peptide - ENSP00000442408
Ensembl peptide - ENSP00000451077
Ensembl peptide - ENSP00000452041
Ensembl peptide - ENSP00000452159
Ensembl peptide - ENSP00000481004
NCBI entrez gene - 2562     See in Manteia.
OMIM - 137192
RefSeq - XM_011521428
RefSeq - NM_000814
RefSeq - NM_001191320
RefSeq - NM_001191321
RefSeq - NM_001278631
RefSeq - NM_021912
RefSeq Peptide - NP_001265560
RefSeq Peptide - NP_068712
RefSeq Peptide - NP_000805
RefSeq Peptide - NP_001178249
RefSeq Peptide - NP_001178250
swissprot - G3V373
swissprot - G3V4W7
swissprot - H0YJU6
swissprot - A0A1B0GVW3
swissprot - F5H7N0
swissprot - P28472
swissprot - X5DQY4
swissprot - A0A1B0GU30
Ensembl - ENSG00000166206
  
Related genetic diseases (OMIM): 612269 - {Epilepsy, childhood absence, susceptibility to, 5}, 612269
  617113 - Epileptic encephalopathy, early infantile, 43, 617113
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABRB3ENSGALG00000029392Gallus gallus
 Gabrb3ENSMUSG00000033676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunitENSG0000014586478
GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunitENSG0000016328876
GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunitENSG0000026808941
GABRR1 / P24046 / gamma-aminobutyric acid type A receptor rho1 subunitENSG0000014627637
A8MPY1 / GABRR3 / gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)ENSG0000018318537
GABRP / O00591 / gamma-aminobutyric acid type A receptor pi subunitENSG0000009475537
GABRR2 / P28476 / gamma-aminobutyric acid type A receptor rho2 subunitENSG0000011188636
GLRA3 / O75311 / glycine receptor alpha 3ENSG0000014545135
GABRD / O14764 / gamma-aminobutyric acid type A receptor delta subunitENSG0000018773035
GLRA2 / P23416 / glycine receptor alpha 2ENSG0000010195835
GLRA1 / P23415 / glycine receptor alpha 1ENSG0000014588834
GLRA4 / Q5JXX5 / glycine receptor alpha 4ENSG0000018882832
GLRB / P48167 / glycine receptor betaENSG0000010973831


Protein motifs (from Interpro)
Interpro ID Name
 IPR002289  Gamma-aminobutyric-acid A receptor, beta subunit
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway IMP
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0043523 regulation of neuron apoptotic process IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0060021 roof of mouth development ISS
 biological_processGO:0060080 inhibitory postsynaptic potential IEA
 biological_processGO:0060119 inner ear receptor cell development IEA
 biological_processGO:0060384 innervation IEA
 biological_processGO:0071420 cellular response to histamine IDA
 biological_processGO:0090102 cochlea development IEA
 biological_processGO:1901215 negative regulation of neuron death IEA
 biological_processGO:1902476 chloride transmembrane transport ISS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:1902711 GABA-A receptor complex ISS
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0004890 GABA-A receptor activity TAS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0022851 GABA-gated chloride ion channel activity ISS
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission
GABA A receptor activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002363 Abnormality of the brainstem 
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 HP:0002527 Falls 
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 HP:0003593 Early onset 
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 HP:0007270 Atypical absence seizures 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010818 Tonic seizures "A type of `seizure` (HP:0001250) characterized by a sudden increase in muscle tone whereby the body, arms, or legs make sudden stiffening movements and consciousness is usually preserved. Tonic seizures can occur during sleep. Tonic seizures usually affect both sides of the body, and cause a fall if the affected person was standing when the seizure started." [HPO:probinson]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011195 EEG with focal sharp slow waves "EEG with focal sharp transient waves of a duration between 80 and 200 msec followed by a slow wave." [HPO:jalbers]
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 HP:0012075 Personality disorder "An abnormality of mental functioning affecting the personality and behavioural tendencies of an individual and characterized by a rigid and unhealthy pattern of thinking and behavior. The definition of a personal disorder implies that the abnormality is not the result of damage or insult to the brain or from another psychiatric disorder." [HPO:probinson]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166206 GABRB3 / P28472 / gamma-aminobutyric acid type A receptor beta3 subunit  / complex
 ENSG00000163288 GABRB1 / P18505 / gamma-aminobutyric acid type A receptor beta1 subunit  / complex
 ENSG00000145864 GABRB2 / P47870 / gamma-aminobutyric acid type A receptor beta2 subunit  / complex
 ENSG00000182256 GABRG3 / Q99928 / gamma-aminobutyric acid type A receptor gamma3 subunit  / complex
 ENSG00000156642 NPTN / Q9Y639 / neuroplastin  / reaction / complex
 ENSG00000113327 GABRG2 / P18507 / gamma-aminobutyric acid type A receptor gamma2 subunit  / complex
 ENSG00000268089 GABRQ / Q9UN88 / gamma-aminobutyric acid type A receptor theta subunit  / complex






 

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