ENSG00000111752


Homo sapiens

Features
Gene ID: ENSG00000111752
  
Biological name :PHC1
  
Synonyms : P78364 / PHC1 / polyhomeotic homolog 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.31
Gene start: 8913896
Gene end: 8941467
  
Corresponding Affymetrix probe sets: 218338_at (Human Genome U133 Plus 2.0 Array)   225958_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000446388
Ensembl peptide - ENSP00000445307
Ensembl peptide - ENSP00000445939
Ensembl peptide - ENSP00000399194
Ensembl peptide - ENSP00000437459
Ensembl peptide - ENSP00000437645
Ensembl peptide - ENSP00000437654
Ensembl peptide - ENSP00000437659
Ensembl peptide - ENSP00000440674
Ensembl peptide - ENSP00000443676
Ensembl peptide - ENSP00000444308
NCBI entrez gene - 1911     See in Manteia.
OMIM - 602978
RefSeq - XM_017018958
RefSeq - NM_004426
RefSeq - XM_005253334
RefSeq - XM_011520599
RefSeq - XM_011520600
RefSeq - XM_011520603
RefSeq - XM_017018955
RefSeq - XM_017018956
RefSeq - XM_017018957
RefSeq Peptide - NP_004417
swissprot - P78364
swissprot - F5H0T9
swissprot - F5H6F5
swissprot - F5H6F9
swissprot - F5H6P9
swissprot - H0YGK7
swissprot - H0YGZ1
swissprot - H0YH74
swissprot - F5GZP4
swissprot - J3KQH6
Ensembl - ENSG00000111752
  
Related genetic diseases (OMIM): 615414 - ?Microcephaly 11, primary, autosomal recessive, 615414
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phc1ENSDARG00000002971Danio rerio
 PHC1ENSGALG00000014263Gallus gallus
 Phc1ENSMUSG00000040669Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHC3 / Q8NDX5 / polyhomeotic homolog 3ENSG0000017388932
PHC2 / Q8IXK0 / polyhomeotic homolog 2ENSG0000013468632
Q96NU1 / SAMD11 / sterile alpha motif domain containing 11ENSG0000018763410
SAMD7 / Q7Z3H4 / sterile alpha motif domain containing 7ENSG000001870338


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR012313  Zinc finger, FCS-type
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016574 histone ubiquitination IDA
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0031519 PcG protein complex IDA
 cellular_componentGO:0035102 PRC1 complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA methylation proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002282 Heterotopia 
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000204227 RING1 / Q06587 / ring finger protein 1  / complex
 ENSG00000168283 BMI1 / P35226 / BMI1 proto-oncogene, polycomb ring finger  / complex
 ENSG00000163602 RYBP / Q8N488 / RING1 and YY1 binding protein  / complex
 ENSG00000277258 PCGF2 / P35227 / polycomb group ring finger 2  / complex






 

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