ENSG00000124198


Homo sapiens

Features
Gene ID: ENSG00000124198
  
Biological name :ARFGEF2
  
Synonyms : ADP ribosylation factor guanine nucleotide exchange factor 2 / ARFGEF2 / Q9Y6D5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.13
Gene start: 48921890
Gene end: 49036693
  
Corresponding Affymetrix probe sets: 215927_at (Human Genome U133 Plus 2.0 Array)   215931_s_at (Human Genome U133 Plus 2.0 Array)   218098_at (Human Genome U133 Plus 2.0 Array)   222518_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360985
NCBI entrez gene - 10564     See in Manteia.
OMIM - 605371
RefSeq - NM_006420
RefSeq - XM_005260252
RefSeq Peptide - NP_006411
swissprot - Q9Y6D5
Ensembl - ENSG00000124198
  
Related genetic diseases (OMIM): 608097 - Periventricular heterotopia with microcephaly, 608097
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A2A5R2ENSMUSG00000074582Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y6D6 / ARFGEF1 / ADP ribosylation factor guanine nucleotide exchange factor 1ENSG0000006677777
IQSEC1 / Q6DN90 / IQ motif and Sec7 domain 1ENSG0000014471112
IQSEC3 / Q9UPP2 / IQ motif and Sec7 domain 3ENSG0000012064512
IQSEC2 / Q5JU85 / IQ motif and Sec7 domain 2ENSG0000012431311
CYTH4 / Q9UIA0 / cytohesin 4ENSG000001000559
CYTH1 / Q15438 / cytohesin 1ENSG000001086699
CYTH3 / O43739 / cytohesin 3ENSG000000082569
CYTH2 / Q99418 / cytohesin 2ENSG000001054438
FBXO8 / Q9NRD0 / F-box protein 8ENSG000001641174
AC008403.1ENSG000002684652


Protein motifs (from Interpro)
Interpro ID Name
 IPR000904  Sec7 domain
 IPR011989  Armadillo-like helical
 IPR015403  Sec7, C-terminal
 IPR016024  Armadillo-type fold
 IPR023394  Sec7, C-terminal domain superfamily
 IPR032629  Mon2, dimerisation and cyclophilin-binding domain
 IPR032691  Guanine nucleotide exchange factor, N-terminal
 IPR035999  Sec7 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001881 receptor recycling IDA
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0006893 Golgi to plasma membrane transport IMP
 biological_processGO:0007032 endosome organization IMP
 biological_processGO:0010256 endomembrane system organization IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032012 regulation of ARF protein signal transduction IEA
 biological_processGO:0032760 positive regulation of tumor necrosis factor production IMP
 biological_processGO:0035556 intracellular signal transduction IDA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0000139 Golgi membrane IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005879 axonemal microtubule IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031410 cytoplasmic vesicle ISS
 cellular_componentGO:0032279 asymmetric synapse IEA
 cellular_componentGO:0032280 symmetric synapse IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043197 dendritic spine IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0055037 recycling endosome IDA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IDA
 molecular_functionGO:0005086 ARF guanyl-nucleotide exchange factor activity IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017022 myosin binding IEA
 molecular_functionGO:0034237 protein kinase A regulatory subunit binding IDA
 molecular_functionGO:0050811 GABA receptor binding IEA


Pathways (from Reactome)
Pathway description
Association of TriC/CCT with target proteins during biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
Show

 HP:0000817 Poor eye contact 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002273 Tetraparesis 
Show

 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
Show

 HP:0003593 Early onset 
Show

 HP:0007165 Periventricular gray matter heterotopias "A form of gray matter heterotopia were the mislocalised gray matter is typically located periventricularly, also sometimes called subependymal heterotopia. Periventricular means beside the ventricles. This is by far the most common location for heterotopia. Subependymal heterotopia present in a wide array of variations. They can be a small single node or a large number of nodes, can exist on either or both sides of the brain at any point along the higher ventricle margins, can be small or large, single or multiple, and can form a small node or a large wavy or curved mass. Periventricular gray matter heterotopia can be seen for example in patients with Smith-Lemli-Opitz-Syndrome." [HPO:curators]
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr