ENSG00000125965


Homo sapiens

Features
Gene ID: ENSG00000125965
  
Biological name :GDF5
  
Synonyms : GDF5 / growth differentiation factor 5 / P43026
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q11.22
Gene start: 35433347
Gene end: 35454746
  
Corresponding Affymetrix probe sets: 206614_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363489
Ensembl peptide - ENSP00000363492
NCBI entrez gene - 8200     See in Manteia.
OMIM - 601146
RefSeq - XM_011529075
RefSeq - NM_000557
RefSeq - NM_001319138
RefSeq Peptide - NP_000548
RefSeq Peptide - NP_001306067
swissprot - P43026
swissprot - F1T0J1
Ensembl - ENSG00000125965
  
Related genetic diseases (OMIM): 201250 - ?Acromesomelic dysplasia, Hunter-Thompson type, 201250
  615072 - Brachydactyly, type A1, C, 615072
  112600 - Brachydactyly, type A2, 112600
  113100 - Brachydactyly, type C, 113100
  200700 - Chondrodysplasia, Grebe type, 200700
  228900 - Du Pan syndrome, 228900
  610017 - Multiple synostoses syndrome 2, 610017
  615298 - Symphalangism, proximal, 1B, 615298
  612400 - {Osteoarthritis-5}, 612400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gdf5ENSDARG00000002760Danio rerio
 GDF5ENSGALG00000038355Gallus gallus
 Gdf5ENSMUSG00000038259Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GDF6 / Q6KF10 / growth differentiation factor 6ENSG0000015646639
GDF7 / Q7Z4P5 / growth differentiation factor 7ENSG0000014386936
BMP2 / P12643 / bone morphogenetic protein 2ENSG0000012584523
BMP4 / P12644 / bone morphogenetic protein 4ENSG0000012537823
BMP6 / P22004 / bone morphogenetic protein 6ENSG0000015316222
BMP7 / P18075 / bone morphogenetic protein 7ENSG0000010114421
BMP5 / P22003 / bone morphogenetic protein 5ENSG0000011217521
BMP8A / Q7Z5Y6 / bone morphogenetic protein 8aENSG0000018368220
BMP10 / O95393 / bone morphogenetic protein 10ENSG0000016321720
BMP8B / P34820 / bone morphogenetic protein 8bENSG0000011698520
GDF2 / Q9UK05 / growth differentiation factor 2ENSG0000026376118


Protein motifs (from Interpro)
Interpro ID Name
 IPR001111  TGF-beta, propeptide
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR015615  Transforming growth factor-beta-related
 IPR017948  Transforming growth factor beta, conserved site
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002062 chondrocyte differentiation IEA
 biological_processGO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway IEA
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway TAS
 biological_processGO:0007267 cell-cell signaling TAS
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation IBA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0030513 positive regulation of BMP signaling pathway IDA
 biological_processGO:0032331 negative regulation of chondrocyte differentiation IDA
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IDA
 biological_processGO:0035136 forelimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0040014 regulation of multicellular organism growth IEA
 biological_processGO:0042981 regulation of apoptotic process IBA
 biological_processGO:0043408 regulation of MAPK cascade IBA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043932 ossification involved in bone remodeling IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0048468 cell development IBA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IDA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060395 SMAD protein signal transduction IDA
 biological_processGO:0060591 chondroblast differentiation IDA
 biological_processGO:2001054 negative regulation of mesenchymal cell apoptotic process IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005125 cytokine activity IBA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity TAS
 molecular_functionGO:0036122 BMP binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Molecules associated with elastic fibres


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000446 Narrow nasal bridge 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001172 Abnormality of the thumb 
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 HP:0001204 Distal symphalangism "The term distal symphalangism refers to a bony fusion of the distal and middle phalanges of the digits of the hand, in other words the distal interphalangeal joint (DIJ) is missing which can be seen either on x-rays or as an absence of the distal interphalangeal finger creases." [HPO:curators]
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 HP:0001230 Broad metacarpals 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001371 Contractures 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001385 Hip dysplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001772 Talipes equinovalgus 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001964 Aplasia/Hypoplasia of metatarsal bones "Absence or underdevelopment of the metatarsal bones." [HPO:curators]
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 HP:0002167 Neurological speech impairment 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002818 Abnormality of the radius 
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 HP:0002827 Dislocated hips 
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 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0002986 Radial bowing 
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 HP:0002990 Fibular aplasia "Absence of the fibula." [HPO:curators]
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 HP:0002992 Abnormality of the tibia "Abnormality of the tibia (shinbone)." [HPO:curators]
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 HP:0002997 Abnormality of the ulna "Ab abnormality of the ulna bone of the forearm." [HPO:curators]
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 HP:0002999 Dislocation of patella "The kneecap normally is located within the groove termed trochlea on the distal femur and can slide up and down in it. Patellar dislocation occurs if the patella fully dislocates out of the groove." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003028 Abnormality of the ankles 
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0003041 Radiohumeral synostosis "An abnormal osseous union (fusion) between the radius and the humerus." [HPO:curators]
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003067 Madelung deformity 
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 HP:0003070 Elbow ankylosis 
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 HP:0003086 Acromesomelia 
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0003826 Stillborn or neonatal death 
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 HP:0004097 Deviated fingers "Deviated fingers is a term that should be used if one or more fingers of the hand are deviated from their normal position, either to the radial or ulnar side. A deviation of a finger can be caused by an abnormal form of one or more of the phalanges of the affected finger, or by a deviation or displacement of one or more phalanges." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005096 distal femoral bowing 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005736 Hypoplastic tibia 
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 HP:0005792 Humeral hypoplasia 
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 HP:0005819 Abnormally short and broad middle phalanges 
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 HP:0005880 Metacarpophalangeal synostoses 
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 HP:0005914 Aplasia/Hypoplasia involving the metacarpal bones "Aplasia or Hypoplasia affecting the metacarpal bones." [HPO:curators]
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006011 Short, cuboidal metacarpals 
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 HP:0006014 Abnormally shaped carpal bones 
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 HP:0006092 Malaligned carpal bone "Malalignement of carpal bone angles either with respect to each other, to the corresponding metacarpals or with respect to the wrist (radius and ulna)." [HPO:sdoelken]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006110 Disproportionately short middle phalanges 
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 HP:0006143 Abnormal finger flexion creases 
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 HP:0006144 Short proximal and middle phalanges 
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 HP:0006206 Hypersegmentation of proximal and middle 2nd, 3rd phalanges 
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 HP:0006228 Valgus hand deformity 
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 HP:0006487 Bowing of the long bones 
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 HP:0006492 Aplasia/Hypoplasia of the fibula "Absence or underdevelopment of the fibula." [HPO:curators]
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 HP:0006498 Aplasia/Hypoplasia of the patella "Absence or underdevelopment of the patella." [HPO:curators]
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008081 Valgus foot deformity 
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 HP:0008096 Medially deviated second toe 
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 HP:0008119 Deformed tarsal bones 
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 HP:0008368 Synostosis involving tarsal bones 
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 HP:0008843 Hip osteoarthritis 
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0008890 Severe short-limb dwarfism 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009161 Aplasia/Hypoplasia of the middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0009177 Symphalangism of the middle and proximal phalanges of the 5th finger "Fusion of the proximal and middle phalanges of the 5th finger." [HPO:curators]
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 HP:0009182 Triangular shaped middle phalanx of the 5th finger "Triangular shaped middle phalanx of the 5th (little) finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
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 HP:0009324 Enlarged epiphysis of the middle phalanx of the 3rd finger "Abnormally large size of the epiphysis located at the proximal end of the middle phalanx of the 3rd finger with respect to age-dependent norms." [HPO:curators]
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 HP:0009331 Triangular epiphysis of the middle phalanx of the 3rd finger "A triangular appearance of the epiphysis of the middle phalanx of the 3rd finger of the hand. This epiphysis is located at the proximal end of the phalanx and is normally nearly flat." [HPO:curators]
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 HP:0009349 Enlarged epiphysis of the proximal phalanx of the 3rd finger "Abnormally large size of the epiphysis located at the proximal end of the proximal phalanx of the 3rd finger with respect to age-dependent norms." [HPO:curators]
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 HP:0009356 Triangular epiphysis of the proximal phalanx of the 3rd finger "A triangular appearance of the epiphysis of the proximal phalanx of the 3rd finger of the hand. This epiphysis is located at the proximal end of the phalanx and is normally nearly flat." [HPO:curators]
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 HP:0009372 Type A2 Brachydactyly 
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 HP:0009373 Type C Brachydactyly 
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 HP:0009417 Pseudoepiphyses of the 3rd finger "A pseudoepiphysis is a secondary ossification center distinct from the normal epiphysis." [HPO:curators]
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 HP:0009436 Triangular shaped middle phalanx of the 3rd finger "Triangular shaped middle phalanx of the 3rd (middle) finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
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 HP:0009456 Triangular shaped proximal phalanx of the 3rd finger "Triangular shaped proximal phalanx of the 3rd (middle) finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
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 HP:0009461 Hypoplastic/small 3rd finger "Hypoplastic/small 3rd (middle) finger." [HPO:curators]
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 HP:0009463 Ulnar deviation of the 3rd finger "Displacement of the 3rd finger towards the ulnar side." [HPO:curators]
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 HP:0009464 Ulnar deviation of the 2nd finger "Displacement of the 2nd (index) finger towards the ulnar side." [HPO:curators]
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009467 Radial deviation of the 2nd finger "Displacement of the 2nd finger towards the radial side." [HPO:curators]
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 HP:0009495 Pseudoepiphyses of the 2nd finger "A pseudoepiphysis is a secondary ossification center distinct from the normal epiphysis." [HPO:curators]
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 HP:0009516 Enlarged epiphysis of the middle phalanx of the 2nd finger 
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 HP:0009523 Triangular epiphysis of the middle phalanx of the 2nd finger 
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 HP:0009527 Enlarged epiphysis of the proximal phalanx of the 2nd finger 
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 HP:0009534 Triangular epiphysis of the proximal phalanx of the 2nd finger 
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 HP:0009536 Hypoplastic/small 2nd finger "Hypoplastic/small 2nd (index) finger." [HPO:curators]
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 HP:0009568 Aplasia/Hypoplasia of the middle phalanx of the 2nd finger 
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 HP:0009575 Triangular shaped middle phalanx of the 2nd finger "Triangular shaped middle phalanx of the 2nd finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
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 HP:0009587 Triangular shaped proximal phalanx of the 2nd finger "Triangular shaped proximal phalanx of the 2nd finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009606 duplicated distal phalanx of the thumb "Complete duplication of the distal phalanx of the thumb. On x-ray two separate bones appear side to side." [HPO:curators]
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 HP:0009684 Stippling of the epiphysis of the distal phalanx of the thumb "The presence of abnormal punctate (speckled, dot-like) calcifications in the epiphysis of the distal phalanx of the thumb." [HPO:curators]
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 HP:0009700 Synostosis involving bones of the fingers "An abnormal union between bones or parts of bones of the fingers. The synonymous term "symphalangism of the hand" may be translated as fusions of bones of varying digree, that involve at least one phalangeal bone of the hand. If bony fusions are revered to as "Symphalangism" the fusion occurs in a proximo-distal axis. Fusions of bones of the fingers in a radio-ulnar axis are refered to as "bony" Syndactyly." [HPO:curators]
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 HP:0009702 Synostosis involving the carpal bones 
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 HP:0009773 Symphalangism affecting the phalanges of the hand "Fusion of two or more phalangeal bones of the hand." [HPO:curators]
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010026 Aplasia/Hypoplasia of the 1st metacarpal "Aplasia or Hypoplasia affecting the 1st metacarpal. In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the digits 2-5 (whereas the proximal phalanx of the thumb is equivalent to the middle phalanges of the other digits)." [HPO:curators]
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 HP:0010034 Hypoplastic/short 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
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 HP:0010038 Hypoplastic/short 2nd metacarpal 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010055 Broad hallux 
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 HP:0010109 Hypoplastic/small hallux 
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 HP:0010259 Cone-shaped epiphyses of the middle phalanges of the hand 
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 HP:0010442 Polydactyly 
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 HP:0010508 Metatarsus valgus "A condition in which the anterior part of the foot rotates outward away from the midline of the body and the heel remains straight." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0010760 Aplasia of the toes 
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0011927 Short digit "One or more digit that appears disproportionately short compared to the hand/foot, whereby either the entire digit or a specific phalanx is shortened." [HPO:probinson]
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 HP:0011929 Hypersegmentation of proximal phalanx of third finger "Presence of an additional phalanx-like bone, producing an extra, wedge-shaped bone at the base of the proximal phalanx of the third finger." [HPO:probinson]
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 HP:0100242 Sarcoma "The presence of a `sarcoma` (MPATH:551)." [HPO:sdoelken]
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 HP:0100264 Proximal symphalangism 
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 HP:0100387 Aplasia of the middle phalanges of the toes 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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