ENSG00000125845


Homo sapiens

Features
Gene ID: ENSG00000125845
  
Biological name :BMP2
  
Synonyms : BMP2 / bone morphogenetic protein 2 / P12643
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p12.3
Gene start: 6767664
Gene end: 6780280
  
Corresponding Affymetrix probe sets: 205289_at (Human Genome U133 Plus 2.0 Array)   205290_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000368104
NCBI entrez gene - 650     See in Manteia.
OMIM - 112261
RefSeq - XM_011529323
RefSeq - NM_001200
RefSeq Peptide - NP_001191
swissprot - P12643
swissprot - C8C060
Ensembl - ENSG00000125845
  
Related genetic diseases (OMIM): 112600 - Brachydactyly, type A2, 112600
  235200 - {HFE hemochromatosis, modifier of}, 235200
  617877 - Short stature, facial dysmorphism, and skeletal anomalies with or without cardiac anomalies, 617877
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bmp2aENSDARG00000013409Danio rerio
 bmp2bENSDARG00000041430Danio rerio
 BMP2ENSGALG00000029301Gallus gallus
 Bmp2ENSMUSG00000027358Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BMP4 / P12644 / bone morphogenetic protein 4ENSG0000012537863
BMP6 / P22004 / bone morphogenetic protein 6ENSG0000015316233
BMP5 / P22003 / bone morphogenetic protein 5ENSG0000011217532
BMP8B / P34820 / bone morphogenetic protein 8bENSG0000011698531
BMP8A / Q7Z5Y6 / bone morphogenetic protein 8aENSG0000018368231
BMP10 / O95393 / bone morphogenetic protein 10ENSG0000016321731
BMP7 / P18075 / bone morphogenetic protein 7ENSG0000010114431
GDF2 / Q9UK05 / growth differentiation factor 2ENSG0000026376130
GDF5 / P43026 / growth differentiation factor 5ENSG0000012596529
GDF6 / Q6KF10 / growth differentiation factor 6ENSG0000015646628
GDF7 / Q7Z4P5 / growth differentiation factor 7ENSG0000014386927


Protein motifs (from Interpro)
Interpro ID Name
 IPR001111  TGF-beta, propeptide
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR015615  Transforming growth factor-beta-related
 IPR017948  Transforming growth factor beta, conserved site
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0000187 activation of MAPK activity IDA
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001649 osteoblast differentiation IDA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis ISS
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0001701 in utero embryonic development ISS
 biological_processGO:0001837 epithelial to mesenchymal transition IDA
 biological_processGO:0001934 positive regulation of protein phosphorylation IDA
 biological_processGO:0001938 positive regulation of endothelial cell proliferation IDA
 biological_processGO:0002062 chondrocyte differentiation IDA
 biological_processGO:0003130 BMP signaling pathway involved in heart induction IDA
 biological_processGO:0003181 atrioventricular valve morphogenesis ISS
 biological_processGO:0003203 endocardial cushion morphogenesis ISS
 biological_processGO:0003308 negative regulation of Wnt signaling pathway involved in heart development IDA
 biological_processGO:0006029 proteoglycan metabolic process IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006468 protein phosphorylation IDA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007267 cell-cell signaling TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009887 animal organ morphogenesis ISS
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition IEA
 biological_processGO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation IMP
 biological_processGO:0010894 negative regulation of steroid biosynthetic process IDA
 biological_processGO:0010922 positive regulation of phosphatase activity IDA
 biological_processGO:0021537 telencephalon development IDA
 biological_processGO:0021978 telencephalon regionalization ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030177 positive regulation of Wnt signaling pathway ISS
 biological_processGO:0030282 bone mineralization IEA
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:0030501 positive regulation of bone mineralization IDA
 biological_processGO:0030509 BMP signaling pathway IEP
 biological_processGO:0031648 protein destabilization IEA
 biological_processGO:0032092 positive regulation of protein binding IDA
 biological_processGO:0032348 negative regulation of aldosterone biosynthetic process IDA
 biological_processGO:0033690 positive regulation of osteoblast proliferation ISS
 biological_processGO:0035051 cardiocyte differentiation IMP
 biological_processGO:0035054 embryonic heart tube anterior/posterior pattern specification ISS
 biological_processGO:0035630 bone mineralization involved in bone maturation IDA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth ISS
 biological_processGO:0042482 positive regulation of odontogenesis ISS
 biological_processGO:0042487 regulation of odontogenesis of dentin-containing tooth IEA
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0043410 positive regulation of MAPK cascade IDA
 biological_processGO:0043569 negative regulation of insulin-like growth factor receptor signaling pathway IDA
 biological_processGO:0045165 cell fate commitment ISS
 biological_processGO:0045597 positive regulation of cell differentiation IEA
 biological_processGO:0045600 positive regulation of fat cell differentiation ISS
 biological_processGO:0045666 positive regulation of neuron differentiation ISS
 biological_processGO:0045669 positive regulation of osteoblast differentiation IEA
 biological_processGO:0045778 positive regulation of ossification IDA
 biological_processGO:0045786 negative regulation of cell cycle IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048468 cell development IBA
 biological_processGO:0048711 positive regulation of astrocyte differentiation ISS
 biological_processGO:0048762 mesenchymal cell differentiation IDA
 biological_processGO:0048839 inner ear development ISS
 biological_processGO:0051042 negative regulation of calcium-independent cell-cell adhesion IDA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IMP
 biological_processGO:0055008 cardiac muscle tissue morphogenesis ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060039 pericardium development ISS
 biological_processGO:0060128 corticotropin hormone secreting cell differentiation ISS
 biological_processGO:0060129 thyroid-stimulating hormone-secreting cell differentiation ISS
 biological_processGO:0060317 cardiac epithelial to mesenchymal transition IDA
 biological_processGO:0060389 pathway-restricted SMAD protein phosphorylation IDA
 biological_processGO:0060395 SMAD protein signal transduction IDA
 biological_processGO:0060485 mesenchyme development IMP
 biological_processGO:0060804 positive regulation of Wnt signaling pathway by BMP signaling pathway ISS
 biological_processGO:0061036 positive regulation of cartilage development IDA
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IDA
 biological_processGO:0071363 cellular response to growth factor stimulus IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0071773 cellular response to BMP stimulus IMP
 biological_processGO:0072138 mesenchymal cell proliferation involved in ureteric bud development ISS
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEP
 biological_processGO:1900745 positive regulation of p38MAPK cascade IDA
 biological_processGO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IDA
 biological_processGO:1902895 positive regulation of pri-miRNA transcription by RNA polymerase II IEA
 biological_processGO:2000065 negative regulation of cortisol biosynthetic process IDA
 biological_processGO:2000726 negative regulation of cardiac muscle cell differentiation IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070724 BMP receptor complex IDA
 molecular_functionGO:0004745 retinol dehydrogenase activity ISS
 molecular_functionGO:0005102 signaling receptor binding TAS
 molecular_functionGO:0005125 cytokine activity IBA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0019211 phosphatase activator activity IDA
 molecular_functionGO:0039706 co-receptor binding IPI
 molecular_functionGO:0046332 SMAD binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IDA
 molecular_functionGO:0070700 BMP receptor binding IDA


Pathways (from Reactome)
Pathway description
Signaling by BMP
Molecules associated with elastic fibres
Transcriptional regulation by RUNX2
Regulation of RUNX2 expression and activity


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000293 Full cheeks 
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
Show

 HP:0000343 Long philtrum 
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 HP:0000391 Thickened helices 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001716 Wolf-Parkinson-White syndrome 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0008096 Medially deviated second toe 
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 HP:0008551 Underdeveloped ears 
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 HP:0009161 Aplasia/Hypoplasia of the middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0009182 Triangular shaped middle phalanx of the 5th finger "Triangular shaped middle phalanx of the 5th (little) finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
Show

 HP:0009372 Type A2 Brachydactyly 
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 HP:0009467 Radial deviation of the 2nd finger "Displacement of the 2nd finger towards the radial side." [HPO:curators]
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 HP:0009536 Hypoplastic/small 2nd finger "Hypoplastic/small 2nd (index) finger." [HPO:curators]
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 HP:0009568 Aplasia/Hypoplasia of the middle phalanx of the 2nd finger 
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 HP:0009575 Triangular shaped middle phalanx of the 2nd finger "Triangular shaped middle phalanx of the 2nd finger. A triangular or so called delta shaped phalanx is a typical result after a bracket epiphysis of the affected phalanx." [HPO:curators]
Show

 HP:0010038 Hypoplastic/short 2nd metacarpal 
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 HP:0010055 Broad hallux 
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 HP:0010059 Broad phalanges of the hallux 
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 HP:0010109 Hypoplastic/small hallux 
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000121989 ACVR2A / P27037 / activin A receptor type 2A  / complex / reaction
 ENSG00000039319 Q7Z3T8 / ZFYVE16 / zinc finger FYVE-type containing 16  / complex / reaction
 ENSG00000114739 ACVR2B / Q13705 / activin A receptor type 2B  / complex / reaction
 ENSG00000204217 BMPR2 / Q13873 / bone morphogenetic protein receptor type 2  / complex / reaction
 ENSG00000107779 BMPR1A / P36894 / bone morphogenetic protein receptor type 1A  / reaction / complex
 ENSG00000113658 SMAD5 / Q99717 / SMAD family member 5  / complex / reaction
 ENSG00000108854 Q9HAU4 / SMURF2 / SMAD specific E3 ubiquitin protein ligase 2  / reaction / complex
 ENSG00000137834 SMAD6 / O43541 / SMAD family member 6  / reaction / complex
 ENSG00000170365 SMAD1 / Q15797 / SMAD family member 1  / complex / reaction
 ENSG00000138696 BMPR1B / O00238 / bone morphogenetic protein receptor type 1B  / complex / reaction
 ENSG00000198742 Q9HCE7 / SMURF1 / SMAD specific E3 ubiquitin protein ligase 1  / reaction / complex
 ENSG00000125845 BMP2 / P12643 / bone morphogenetic protein 2  / complex
 ENSG00000120693 SMAD9 / O15198 / SMAD family member 9  / reaction / complex
 ENSG00000101665 SMAD7 / O15105 / SMAD family member 7  / reaction / complex






 

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