ENSG00000156466


Homo sapiens

Features
Gene ID: ENSG00000156466
  
Biological name :GDF6
  
Synonyms : GDF6 / growth differentiation factor 6 / Q6KF10
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q22.1
Gene start: 96142330
Gene end: 96160792
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000287020
Ensembl peptide - ENSP00000483711
Ensembl peptide - ENSP00000480170
NCBI entrez gene - 392255     See in Manteia.
OMIM - 601147
RefSeq - NM_001001557
RefSeq Peptide - NP_001001557
swissprot - A0A0S2A5D6
swissprot - A0A087X0X2
swissprot - A0PK22
swissprot - Q6KF10
Ensembl - ENSG00000156466
  
Related genetic diseases (OMIM): 118100 - Klippel-Feil syndrome 1, autosomal dominant, 118100
  615360 - Leber congenital amaurosis 17, 615360
  613703 - Microphthalmia with coloboma 6, digenic, 613703
  613094 - Microphthalmia, isolated 4, 613094
  617898 - Multiple synostoses syndrome 4, 617898
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gdf6aENSDARG00000053479Danio rerio
 gdf6bENSDARG00000005510Danio rerio
 GDF6ENSGALG00000035901Gallus gallus
 Gdf6ENSMUSG00000051279Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GDF7 / Q7Z4P5 / growth differentiation factor 7ENSG0000014386946
GDF5 / P43026 / growth differentiation factor 5ENSG0000012596543
BMP10 / O95393 / bone morphogenetic protein 10ENSG0000016321726
BMP4 / P12644 / bone morphogenetic protein 4ENSG0000012537826
BMP8A / Q7Z5Y6 / bone morphogenetic protein 8aENSG0000018368225
BMP8B / P34820 / bone morphogenetic protein 8bENSG0000011698525
BMP5 / P22003 / bone morphogenetic protein 5ENSG0000011217524
BMP7 / P18075 / bone morphogenetic protein 7ENSG0000010114424
BMP2 / P12643 / bone morphogenetic protein 2ENSG0000012584524
BMP6 / P22004 / bone morphogenetic protein 6ENSG0000015316224
GDF2 / Q9UK05 / growth differentiation factor 2ENSG0000026376123


Protein motifs (from Interpro)
Interpro ID Name
 IPR001111  TGF-beta, propeptide
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR015615  Transforming growth factor-beta-related
 IPR017948  Transforming growth factor beta, conserved site
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation IDA
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IMP
 biological_processGO:0032924 activin receptor signaling pathway IDA
 biological_processGO:0042981 regulation of apoptotic process IBA
 biological_processGO:0043408 regulation of MAPK cascade IBA
 biological_processGO:0045444 fat cell differentiation ISS
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0048468 cell development IBA
 biological_processGO:0060389 pathway-restricted SMAD protein phosphorylation IDA
 biological_processGO:0060395 SMAD protein signal transduction ISS
 biological_processGO:1900745 positive regulation of p38MAPK cascade ISS
 biological_processGO:1990009 retinal cell apoptotic process ISS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0005125 cytokine activity IBA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding IBA
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000365 Hearing loss 
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 HP:0000410 Mixed hearing loss 
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 HP:0000465 Webbed neck 
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 HP:0000466 Limited neck range of motion 
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 HP:0000470 Short neck 
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001141 Severe visual impairment 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001335 Mirror hand movements (bimanual synkinesia) 
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 HP:0001425 Heterogeneous 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002162 Low posterior hairline 
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 HP:0002269 Neuronal migration disorder 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002813 Abnormality of the extremities "Any abnormality of the arms or legs." [HPO:curators]
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 HP:0003043 Abnormality of the shoulder "An abnormality of the shoulder, which is defined as the structures surrounding the shoulder joint where the humerus attaches to the scapula." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0004602 cervical vertebral fusion, c2-c3 "Fusion of cervical vertebrae, most common of the vertebrae C2 and C3, caused by a failure in the normal segmentation or division of the cervical vertebrae during the early weeks of fetal development, leading to a short neck with a low hairline at the back of the head, and restricted mobility of the upper spine." [HPO:curators]
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 HP:0005107 Abnormality of the sacrum 
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 HP:0005640 Abnormal vertebral segmentation and fusion 
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 HP:0005988 Torticollis, congenital 
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 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
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 HP:0007291 Posterior fossa cysts 
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009911 Abnormality of the temporal bone "Abnormality of the temporal bone of the skull, which is situated at the sides and base of the skull roughly underlying the region of the face known as the temple." [HPO:curators]
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 HP:0010469 Aplasia of the testes "Absence of the testes." [HPO:curators]
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 HP:0010984 Digenic inheritance "A type of multifactorial inheritance governed by the simultaneous action of two gene loci." [HPO:probinson, ISBN:978-0192628961]
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 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
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 HP:0030325 Cervicomedullary schisis "Fissure within the spinal cord of the neck." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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