ENSG00000166086


Homo sapiens

Features
Gene ID: ENSG00000166086
  
Biological name :JAM3
  
Synonyms : JAM3 / junctional adhesion molecule 3 / Q9BX67
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q25
Gene start: 134068925
Gene end: 134152001
  
Corresponding Affymetrix probe sets: 212813_at (Human Genome U133 Plus 2.0 Array)   231720_s_at (Human Genome U133 Plus 2.0 Array)   231721_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000299106
Ensembl peptide - ENSP00000395742
Ensembl peptide - ENSP00000432455
Ensembl peptide - ENSP00000433206
NCBI entrez gene - 83700     See in Manteia.
OMIM - 606871
RefSeq - NM_032801
RefSeq - NM_001205329
RefSeq Peptide - NP_001192258
RefSeq Peptide - NP_116190
swissprot - Q9BX67
swissprot - H0YCW9
swissprot - H0YD98
Ensembl - ENSG00000166086
  
Related genetic diseases (OMIM): 613730 - Hemorrhagic destruction of the brain, subependymal calcification, and cataracts, 613730
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 jam3aENSDARG00000114589Danio rerio
 jam3bENSDARG00000061794Danio rerio
 JAM3ENSGALG00000001472Gallus gallus
 Jam3ENSMUSG00000031990Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
F11R / Q9Y624 / F11 receptorENSG0000015876931
JAM2 / P57087 / junctional adhesion molecule 2ENSG0000015472131


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001780 neutrophil homeostasis IEA
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002318 myeloid progenitor cell differentiation IEA
 biological_processGO:0002523 leukocyte migration involved in inflammatory response IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0019226 transmission of nerve impulse IEA
 biological_processGO:0030010 establishment of cell polarity IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0031103 axon regeneration IEA
 biological_processGO:0042552 myelination IEA
 biological_processGO:0050900 leukocyte migration TAS
 biological_processGO:0090022 regulation of neutrophil chemotaxis IDA
 biological_processGO:0090138 regulation of actin cytoskeleton organization by cell-cell adhesion IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030057 desmosome IEA
 cellular_componentGO:0033010 paranodal junction IEA
 cellular_componentGO:0043220 Schmidt-Lanterman incisure IEA
 cellular_componentGO:0044291 cell-cell contact zone IDA
 molecular_functionGO:0005178 integrin binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Cell surface interactions at the vascular wall
Integrin cell surface interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000800 Cystic renal dysplasia 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0005484 Microcephaly, postnatal 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000154721 JAM2 / P57087 / junctional adhesion molecule 2  / complex / reaction
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / complex / reaction
 ENSG00000169896 ITGAM / P11215 / integrin subunit alpha M  / complex / reaction
 ENSG00000140678 ITGAX / P20702 / integrin subunit alpha X  / reaction / complex
 ENSG00000160255 ITGB2 / P05107 / integrin subunit beta 2  / reaction / complex
 ENSG00000166086 JAM3 / Q9BX67 / junctional adhesion molecule 3  / reaction / complex
 ENSG00000115232 ITGA4 / P13612 / integrin subunit alpha 4  / complex / reaction






 

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