ENSG00000168269


Homo sapiens

Features
Gene ID: ENSG00000168269
  
Biological name :FOXI1
  
Synonyms : forkhead box I1 / FOXI1 / Q12951
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q35.1
Gene start: 170105897
Gene end: 170109725
  
Corresponding Affymetrix probe sets: 208006_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415483
Ensembl peptide - ENSP00000304286
NCBI entrez gene - 2299     See in Manteia.
OMIM - 601093
RefSeq - NM_012188
RefSeq - NM_144769
RefSeq Peptide - NP_036320
RefSeq Peptide - NP_658982
swissprot - Q12951
swissprot - E0XEN6
Ensembl - ENSG00000168269
  
Related genetic diseases (OMIM): 600791 - Enlarged vestibular aqueduct, 600791

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 foxi3aENSDARG00000055926Danio rerio
 foxi3bENSDARG00000009550Danio rerio
 FOXI1ENSGALG00000002105Gallus gallus
 Foxi1ENSMUSG00000047861Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FOXI3 / A8MTJ6 / forkhead box I3ENSG0000021433645
FOXI2 / Q6ZQN5 / forkhead box I2ENSG0000018676640
FOXC1 / Q12948 / forkhead box C1ENSG0000005459827
FOXA2 / Q9Y261 / forkhead box A2ENSG0000012579826
FOXC2 / Q99958 / forkhead box C2ENSG0000017669226
FOXA1 / P55317 / forkhead box A1ENSG0000012951425
FOXL1 / Q12952 / forkhead box L1ENSG0000017667823
FOXL2 / P58012 / forkhead box L2ENSG0000018377023
FOXA3 / P55318 / forkhead box A3ENSG0000017060823
FOXS1 / O43638 / forkhead box S1ENSG0000017977223
FOXB2 / Q5VYV0 / forkhead box B2ENSG0000020461219
FOXB1 / Q99853 / forkhead box B1ENSG0000017195619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2
 IPR033065  Forkhead box protein I1
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0009653 anatomical structure morphogenesis IBA
 biological_processGO:0009792 embryo development ending in birth or egg hatching NAS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0008301 DNA binding, bending NAS
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000376 Mondini malformation "The normal cochlea has two and one half turns. Mondini malformation refers to the development of only one and a half turns of the cochlea. The defect usually occurs in the seventh week of gestation after development of the basal turn. There is incomplete partition with resulting confluency of the middle and apical turns." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000843 Hyperparathyroidism 
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 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001751 Vestibular dysfunction 
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 HP:0001939 Metabolism abnormality 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002167 Neurological speech impairment 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002777 Tracheal stenosis 
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 HP:0002890 Thyroid carcinoma 
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 HP:0008223 Compensated hypothyroidism 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0008554 Cochlear malformation "A cochlear malformation may include a membranous abnormality, a bony abnormality, or a combination of the two." [HPO:curators]
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 HP:0008586 Hypoplastic cochlea 
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 HP:0011387 Enlarged vestibular aqueduct "Increased size of the vestibular aqueduct." [DDD:mbitner-glidicz]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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