ENSG00000176692


Homo sapiens

Features
Gene ID: ENSG00000176692
  
Biological name :FOXC2
  
Synonyms : forkhead box C2 / FOXC2 / Q99958
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.1
Gene start: 86567251
Gene end: 86569728
  
Corresponding Affymetrix probe sets: 214520_at (Human Genome U133 Plus 2.0 Array)   239058_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000326371
NCBI entrez gene - 2303     See in Manteia.
OMIM - 602402
RefSeq - NM_005251
RefSeq Peptide - NP_005242
swissprot - Q99958
Ensembl - ENSG00000176692
  
Related genetic diseases (OMIM): 153400 - Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus, 153400

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Foxc2ENSMUSG00000046714Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FOXC1 / Q12948 / forkhead box C1ENSG0000005459854
FOXS1 / O43638 / forkhead box S1ENSG0000017977225
FOXA1 / P55317 / forkhead box A1ENSG0000012951424
FOXA2 / Q9Y261 / forkhead box A2ENSG0000012579824
FOXL1 / Q12952 / forkhead box L1ENSG0000017667824
FOXL2 / P58012 / forkhead box L2ENSG0000018377022
FOXA3 / P55318 / forkhead box A3ENSG0000017060821
FOXI1 / Q12951 / forkhead box I1ENSG0000016826920
FOXI3 / A8MTJ6 / forkhead box I3ENSG0000021433620
FOXB2 / Q5VYV0 / forkhead box B2ENSG0000020461219
FOXI2 / Q6ZQN5 / forkhead box I2ENSG0000018676619
FOXB1 / Q99853 / forkhead box B1ENSG0000017195619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0001945 lymph vessel development IEA
 biological_processGO:0001946 lymphangiogenesis IMP
 biological_processGO:0001974 blood vessel remodeling IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007498 mesoderm development NAS
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008286 insulin receptor signaling pathway IDA
 biological_processGO:0009725 response to hormone IDA
 biological_processGO:0010595 positive regulation of endothelial cell migration IEA
 biological_processGO:0014032 neural crest cell development IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0033630 positive regulation of cell adhesion mediated by integrin IEA
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0035470 positive regulation of vascular wound healing IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046620 regulation of organ growth IEA
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway IEA
 biological_processGO:0048341 paraxial mesoderm formation IEA
 biological_processGO:0048343 paraxial mesodermal cell fate commitment IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048844 artery morphogenesis IEA
 biological_processGO:0050880 regulation of blood vessel size IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IEA
 biological_processGO:0060038 cardiac muscle cell proliferation IEA
 biological_processGO:0072011 glomerular endothelium development IEA
 biological_processGO:0072112 glomerular visceral epithelial cell differentiation IEA
 biological_processGO:0072144 glomerular mesangial cell development IEA
 biological_processGO:0090050 positive regulation of cell migration involved in sprouting angiogenesis IEA
 biological_processGO:1902257 negative regulation of apoptotic process involved in outflow tract morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000075 Renal duplication 
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 HP:0000093 Proteinuria 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000465 Webbed neck 
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 HP:0000495 Recurrent corneal erosions "The presence of recurrent corneal epithelial erosions. Although most corneal epithelial defects heal quickly, some may show recurrent ulcerations." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000819 Diabetes mellitus 
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 HP:0001004 Lymphedema 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001970 Tubulointerstitial nephritis 
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 HP:0002619 Varicose veins 
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 HP:0003011 Abnormality of musculature "Abnormality originating in one or more muscles." [HPO:curators]
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 HP:0003550 Lymphedema, predominantly in the lower limbs 
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 HP:0004930 Abnormality of the pulmonary vasculature 
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 HP:0009743 Distichiasis "Distichiasis refers to ouble rows of eyelashes." [HPO:curators]
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 HP:0009745 Epidural arachnoid cysts of the spinal canal "Presence of arachnoid cysts of the spinal canal extradurally in the epidural space." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012804 Corneal ulceration "Disruption of the epithelial layer of the cornea with involvement of the underlying stroma." [HPO:probinson]
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 HP:0100244 Fibrosarcoma "A fibroblastic sarcoma is a malignant tumor derived from fibrous connective tissue and characterized by immature proliferating fibroblasts or undifferentiated anaplastic spindle cells." [HPO:sdoelken]
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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