ENSG00000054598


Homo sapiens

Features
Gene ID: ENSG00000054598
  
Biological name :FOXC1
  
Synonyms : forkhead box C1 / FOXC1 / Q12948
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p25.3
Gene start: 1609972
Gene end: 1613897
  
Corresponding Affymetrix probe sets: 1553613_s_at (Human Genome U133 Plus 2.0 Array)   213260_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370256
Ensembl peptide - ENSP00000493906
NCBI entrez gene - 2296     See in Manteia.
OMIM - 601090
RefSeq - NM_001453
RefSeq Peptide - NP_001444
swissprot - Q12948
swissprot - W6CJ52
Ensembl - ENSG00000054598
  
Related genetic diseases (OMIM): 601631 - Anterior segment dysgenesis 3, multiple subtypes, 601631
  602482 - Axenfeld-Rieger syndrome, type 3, 602482

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 foxc1aENSDARG00000091481Danio rerio
 foxc1bENSDARG00000055398Danio rerio
 Foxc1ENSMUSG00000050295Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FOXC2 / Q99958 / forkhead box C2ENSG0000017669249
FOXL1 / Q12952 / forkhead box L1ENSG0000017667823
FOXS1 / O43638 / forkhead box S1ENSG0000017977222
FOXA1 / P55317 / forkhead box A1ENSG0000012951422
FOXA2 / Q9Y261 / forkhead box A2ENSG0000012579820
FOXL2 / P58012 / forkhead box L2ENSG0000018377020
FOXI3 / A8MTJ6 / forkhead box I3ENSG0000021433619
FOXB2 / Q5VYV0 / forkhead box B2ENSG0000020461218
FOXI1 / Q12951 / forkhead box I1ENSG0000016826918
FOXA3 / P55318 / forkhead box A3ENSG0000017060818
FOXB1 / Q99853 / forkhead box B1ENSG0000017195618
FOXI2 / Q6ZQN5 / forkhead box I2ENSG0000018676617


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001541 ovarian follicle development IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001654 eye development IDA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0001945 lymph vessel development IEA
 biological_processGO:0001958 endochondral ossification IEA
 biological_processGO:0001974 blood vessel remodeling IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007507 heart development IDA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0008354 germ cell migration IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition IMP
 biological_processGO:0014031 mesenchymal cell development IEA
 biological_processGO:0014032 neural crest cell development IEA
 biological_processGO:0016477 cell migration IMP
 biological_processGO:0016525 negative regulation of angiogenesis IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0030203 glycosaminoglycan metabolic process IEA
 biological_processGO:0032808 lacrimal gland development IEA
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0036438 maintenance of lens transparency IEA
 biological_processGO:0038084 vascular endothelial growth factor signaling pathway IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IMP
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0043388 positive regulation of DNA binding IMP
 biological_processGO:0045618 positive regulation of keratinocyte differentiation IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated NAS
 biological_processGO:0045930 negative regulation of mitotic cell cycle IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046620 regulation of organ growth IEA
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway IEA
 biological_processGO:0048341 paraxial mesoderm formation IEA
 biological_processGO:0048762 mesenchymal cell differentiation IEA
 biological_processGO:0048844 artery morphogenesis IEA
 biological_processGO:0050880 regulation of blood vessel size IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IEA
 biological_processGO:0060038 cardiac muscle cell proliferation IEA
 biological_processGO:0070098 chemokine-mediated signaling pathway IEA
 biological_processGO:0071364 cellular response to epidermal growth factor stimulus IMP
 biological_processGO:0072010 glomerular epithelium development IEA
 biological_processGO:1901491 negative regulation of lymphangiogenesis IEA
 biological_processGO:1901534 positive regulation of hematopoietic progenitor cell differentiation IEA
 biological_processGO:1902038 positive regulation of hematopoietic stem cell differentiation IEA
 biological_processGO:1902257 negative regulation of apoptotic process involved in outflow tract morphogenesis IEA
 biological_processGO:1904798 positive regulation of core promoter binding IEA
 biological_processGO:1990869 cellular response to chemokine IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005720 nuclear heterochromatin IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001223 transcription coactivator binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0008301 DNA binding, bending IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000523 Subcapsular cataracts 
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 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
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 HP:0000558 Rieger anomaly 
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 HP:0000572 Visual loss 
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000627 Posterior embryotoxon 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000659 Peters anomaly 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0001087 Congenital glaucoma 
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001425 Heterogeneous 
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 HP:0001492 Axenfeld anomaly 
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 HP:0001510 Growth retardation 
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 HP:0001582 Loose, redundant skin 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002280 Enlarged cisterna magna 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007905 Abnormal iris vasculature 
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 HP:0007990 Hypoplastic iris stroma 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0008059 Aplasia/Hypoplasia of the macula 
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 HP:0009918 Ectopia pupillae "A malposition of the pupil." [HPO:curators]
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 HP:0011120 Saddle nose "A depression of the dorsum of the nose with loss of nasal tip support and definition, shortened (vertical) nasal length, overrotation of the nasal tip, and retrusion of the nasal spine and caudal septum." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011483 Anterior synechiae of the anterior chamber "Adhesions between the iris and the cornea." [DDD:ncarter]
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 HP:0011493 Central opacification of the cornea "Reduced transparency of the central portion of the corneal stroma." [DDD:ncarter]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0031159 Thinning of Descemet membrane "A reduction in the thickness of Descemet s membrane." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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