ENSG00000169926


Homo sapiens

Features
Gene ID: ENSG00000169926
  
Biological name :KLF13
  
Synonyms : KLF13 / Kruppel like factor 13 / Q9Y2Y9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q13.3
Gene start: 31326855
Gene end: 31435665
  
Corresponding Affymetrix probe sets: 1564463_at (Human Genome U133 Plus 2.0 Array)   219878_s_at (Human Genome U133 Plus 2.0 Array)   225390_s_at (Human Genome U133 Plus 2.0 Array)   230094_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452867
Ensembl peptide - ENSP00000302456
Ensembl peptide - ENSP00000452609
NCBI entrez gene - 51621     See in Manteia.
OMIM - 605328
RefSeq - NM_015995
RefSeq Peptide - NP_057079
swissprot - X5DNR2
swissprot - H0YK05
swissprot - H0YKM8
swissprot - Q9Y2Y9
Ensembl - ENSG00000169926
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 klf13ENSDARG00000061368Danio rerio
 KLF13ENSGALG00000032748Gallus gallus
 Klf13ENSMUSG00000052040Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KLF14 / Kruppel like factor 14ENSG0000026626540
KLF16 / Q9BXK1 / Kruppel like factor 16ENSG0000012991139
KLF9 / Q13886 / Kruppel like factor 9ENSG0000011913838
KLF11 / O14901 / Kruppel like factor 11ENSG0000017205933
KLF10 / Q13118 / Kruppel like factor 10ENSG0000015509030
SP4 / Q02446 / Sp4 transcription factorENSG0000010586628
SP3 / Q02447 / Sp3 transcription factorENSG0000017284528
SP1 / P08047 / Sp1 transcription factorENSG0000018559127
SP7 / Q8TDD2 / Sp7 transcription factorENSG0000017037427
SP8 / Q8IXZ3 / Sp8 transcription factorENSG0000016465127
SP9 / P0CG40 / Sp9 transcription factorENSG0000021723626
SP2 / Q02086 / Sp2 transcription factorENSG0000016718226
SP5 / Q6BEB4 / Sp5 transcription factorENSG0000020433524
SP6 / Q3SY56 / Sp6 transcription factorENSG0000018912022


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0045647 negative regulation of erythrocyte differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0001156 Brachydactyly 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001999 Facial dysmorphism 
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0003829 Incomplete penetrance 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0008050 Abnormality of the palpebral fissures 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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