ENSG00000178562


Homo sapiens

Features
Gene ID: ENSG00000178562
  
Biological name :CD28
  
Synonyms : CD28 / CD28 molecule / P10747
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q33.2
Gene start: 203706475
Gene end: 203738912
  
Corresponding Affymetrix probe sets: 206545_at (Human Genome U133 Plus 2.0 Array)   211856_x_at (Human Genome U133 Plus 2.0 Array)   211861_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000324890
Ensembl peptide - ENSP00000363605
Ensembl peptide - ENSP00000393648
NCBI entrez gene - 940     See in Manteia.
OMIM - 186760
RefSeq - XM_011512197
RefSeq - NM_001243077
RefSeq - NM_001243078
RefSeq - NM_006139
RefSeq - XM_011512194
RefSeq - XM_011512195
RefSeq Peptide - NP_001230006
RefSeq Peptide - NP_001230007
RefSeq Peptide - NP_006130
swissprot - P10747
Ensembl - ENSG00000178562
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CD28ENSGALG00000008669Gallus gallus
 Cd28ENSMUSG00000026012Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CTLA4 / P16410 / cytotoxic T-lymphocyte associated protein 4ENSG0000016359927


Protein motifs (from Interpro)
Interpro ID Name
 IPR008093  T cell antigen CD28
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002863 positive regulation of inflammatory response to antigenic stimulus IEA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0006959 humoral immune response TAS
 biological_processGO:0007166 cell surface receptor signaling pathway TAS
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling IEA
 biological_processGO:0031295 T cell costimulation TAS
 biological_processGO:0032733 positive regulation of interleukin-10 production IDA
 biological_processGO:0032753 positive regulation of interleukin-4 production IDA
 biological_processGO:0042089 cytokine biosynthetic process TAS
 biological_processGO:0042102 positive regulation of T cell proliferation TAS
 biological_processGO:0042110 T cell activation IGI
 biological_processGO:0043066 negative regulation of apoptotic process TAS
 biological_processGO:0045060 negative thymic T cell selection IEA
 biological_processGO:0045066 regulatory T cell differentiation IDA
 biological_processGO:0045070 positive regulation of viral genome replication NAS
 biological_processGO:0045086 positive regulation of interleukin-2 biosynthetic process ISS
 biological_processGO:0045589 regulation of regulatory T cell differentiation IEA
 biological_processGO:0045727 positive regulation of translation NAS
 biological_processGO:0045840 positive regulation of mitotic nuclear division ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046641 positive regulation of alpha-beta T cell proliferation IEA
 biological_processGO:0046854 phosphatidylinositol phosphorylation IEA
 biological_processGO:0048304 positive regulation of isotype switching to IgG isotypes IEA
 biological_processGO:0050690 regulation of defense response to virus by virus TAS
 biological_processGO:0050852 T cell receptor signaling pathway IEA
 biological_processGO:0051897 positive regulation of protein kinase B signaling TAS
 biological_processGO:0097190 apoptotic signaling pathway IEA
 cellular_componentGO:0001772 immunological synapse IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0098636 protein complex involved in cell adhesion IDA
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005070 SH3/SH2 adaptor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015026 coreceptor activity TAS
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0042802 identical protein binding NAS
 molecular_functionGO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity TAS


Pathways (from Reactome)
Pathway description
PIP3 activates AKT signaling
Nef mediated downregulation of CD28 cell surface expression
Constitutive Signaling by Aberrant PI3K in Cancer
CD28 co-stimulation
CD28 dependent PI3K/Akt signaling
CD28 dependent Vav1 pathway
PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000492 Abnormality of the eyelid 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000958 Dry skin 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001029 Poikiloderma 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002103 Abnormality of the pleura "An abnormality of the pleura, the thin, transparent membrane which covers the lungs and lines the inside of the chest walls." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002721 Immunodeficiency 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0004332 Abnormality of lymphocytes 
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 HP:0005561 Generalized abnormality of the bone marrow 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0008069 Neoplasia of the skin 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010701 Abnormal immunoglobulin level "An abnormal deviation from normal levels of immunoglobulins in blood." [HPO:probinson]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0012192 Cutaneous T-cell lymphoma "A type of T-cell lymphoma that exhibits malignant infiltration of the skin." [HPO:probinson]
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 HP:0100725 Lichenification "Thickening and hardenining of the epidermis seen with exaggeration of normal skin lines." [HPO:probinson]
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 HP:0100758 Gangrene "A serious and potentially life-threatening condition that arises when a considerable mass of body tissue dies (necrosis)." [ISBN:9780781770873]
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 HP:0200035 skin plaques "A broad papule, or confluence of papules equal to or greater than 10 mm. Has also been defined as an elevated, plateau-like lesion that is greater in its diameter than in its depth." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000121594 CD80 / P33681 / CD80 molecule  / reaction / complex
 ENSG00000121879 P42336 / PIK3CA / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha  / reaction / complex
 ENSG00000141968 VAV1 / P15498 / vav guanine nucleotide exchange factor 1  / complex / reaction
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / reaction / complex
 ENSG00000145675 P27986 / PIK3R1 / phosphoinositide-3-kinase regulatory subunit 1  / complex / reaction
 ENSG00000114013 CD86 / P42081 / CD86 molecule  / reaction / complex
 ENSG00000178562 CD28 / P10747 / CD28 molecule  / complex
 ENSG00000161203 AP2M1 / Q96CW1 / adaptor related protein complex 2 mu 1 subunit  / reaction / complex
 ENSG00000182866 LCK / P06239 / LCK proto-oncogene, Src family tyrosine kinase  / complex / reaction
 ENSG00000100351 GRAP2 / O75791 / GRB2-related adaptor protein 2  / reaction / complex






 

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