ENSGALG00000008303


Gallus gallus

Features
Gene ID: ENSGALG00000008303
  
Biological name :LHX5
  
Synonyms : Gallus gallus LIM homeobox 5 (LHX5), mRNA. / LHX5
  
Possible biological names infered from orthology : LIM homeobox 5 / LIM homeobox protein 5 / P61375 / Q9H2C1
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 12639428
Gene end: 12644631
  
Corresponding Affymetrix probe sets: GgaAffx.5243.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013502
NCBI entrez gene - 771259     See in Manteia.
RefSeq - NM_001320906
RefSeq - XM_001234552
RefSeq - XM_004934489
RefSeq Peptide - NP_001307835
swissprot - E1BQX0
Ensembl - ENSGALG00000008303
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lhx5ENSDARG00000057936Danio rerio
 LHX5ENSG00000089116Homo sapiens
 Lhx5ENSMUSG00000029595Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX1 / LIM/homeobox protein Lhx1 / P48742* / P63006* / LIM homeobox 1*ENSGALG0000000540975
LHX3 / LIM/homeobox protein Lhx3 / Q9UBR4* / P50481* / LIM homeobox 3* / LIM homeobox protein 3*ENSGALG0000000392838
LHX4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSGALG0000003658736
LMX1A / LIM homeobox transcription factor 1 alpha / Q8TE12* / Q9JKU8*ENSGALG0000000342431
LMX1B / P53413 / LIM/homeobox protein LMX-1.2 / O60663* / LIM homeobox transcription factor 1 beta*ENSGALG0000004058230
LHX9 / LIM/homeobox protein Lhx9 / Q9NQ69* / Q9WUH2* / LIM homeobox 9*ENSGALG0000000222326
LHX2 / LIM/homeobox protein Lhx2 ENSGALG0000000112426
ISL1 / P50211 / Insulin gene enhancer protein ISL-1 / P61372* / P61371* / ISL LIM homeobox 1* / Insulin enhancer protein ISL-1 *ENSGALG0000001488426
LHX6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSGALG0000000134723
LHX8 / LIM/homeobox protein Lhx8 / O35652* / Q68G74* / LIM homeobox 8*ENSGALG0000001136921
ISL2 / ISL LIM homeobox 2 / Q96A47* / Q9CXV0* / Insulin enhancer protein ISL-2 *ENSGALG0000003339118
LMO4 / LIM domain only 4 / P61968* / P61969* / LIM domain transcription factor LMO4 *ENSGALG0000000625214
LMO3 / LIM domain only 3 / Q8BZL8* / Q8TAP4* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSGALG0000003635812
ENSGALG0000003567912
LMO2 / LIM domain only 2 / P25791* / P25801* / Rhombotin-2 *ENSGALG0000002989210


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007267 cell-cell signaling IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021846 cell proliferation in forebrain IEA
 biological_processGO:0021879 forebrain neuron differentiation IEA
 biological_processGO:0021937 cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr