ENSGALG00000001347


Gallus gallus

Features
Gene ID: ENSGALG00000001347
  
Biological name :LHX6
  
Synonyms : LHX6 / LIM homeobox 6
  
Possible biological names infered from orthology : Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA. / Q9R1R0 / Q9UPM6
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 9209478
Gene end: 9219104
  
Corresponding Affymetrix probe sets: GgaAffx.897.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044370
Ensembl peptide - ENSGALP00000002055
NCBI entrez gene - 772259     See in Manteia.
RefSeq - XM_015279838
RefSeq - XM_015279837
swissprot - F1NLU0
swissprot - A0A1D5NVJ5
Ensembl - ENSGALG00000001347
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lhx6ENSDARG00000006896Danio rerio
 si:ch211-236k19.2ENSDARG00000052165Danio rerio
 LHX6ENSG00000106852Homo sapiens
 Lhx6ENSMUSG00000026890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX8 / LIM/homeobox protein Lhx8 / O35652* / Q68G74* / LIM homeobox 8*ENSGALG0000001136948
LHX2 / LIM/homeobox protein Lhx2 ENSGALG0000000112428
LHX9 / LIM/homeobox protein Lhx9 / Q9NQ69* / Q9WUH2* / LIM homeobox 9*ENSGALG0000000222327
LHX3 / LIM/homeobox protein Lhx3 / Q9UBR4* / P50481* / LIM homeobox 3* / LIM homeobox protein 3*ENSGALG0000000392825
LHX5 / Gallus gallus LIM homeobox 5 (LHX5), mRNA. / P61375* / Q9H2C1* / LIM homeobox 5* / LIM homeobox protein 5*ENSGALG0000000830324
LMX1A / LIM homeobox transcription factor 1 alpha / Q8TE12* / Q9JKU8*ENSGALG0000000342424
LHX1 / LIM/homeobox protein Lhx1 / P48742* / P63006* / LIM homeobox 1*ENSGALG0000000540924
ISL1 / P50211 / Insulin gene enhancer protein ISL-1 / P61372* / P61371* / ISL LIM homeobox 1* / Insulin enhancer protein ISL-1 *ENSGALG0000001488424
LMX1B / P53413 / LIM/homeobox protein LMX-1.2 / O60663* / LIM homeobox transcription factor 1 beta*ENSGALG0000004058224
LHX4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSGALG0000003658723
LMO4 / LIM domain only 4 / P61968* / P61969* / LIM domain transcription factor LMO4 *ENSGALG0000000625215
ISL2 / ISL LIM homeobox 2 / Q96A47* / Q9CXV0* / Insulin enhancer protein ISL-2 *ENSGALG0000003339115
ENSGALG0000003567914
LMO3 / LIM domain only 3 / Q8BZL8* / Q8TAP4* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSGALG0000003635813
LMO2 / LIM domain only 2 / P25791* / P25801* / Rhombotin-2 *ENSGALG0000002989211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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