ENSGALG00000002223


Gallus gallus

Features
Gene ID: ENSGALG00000002223
  
Biological name :LHX9
  
Synonyms : LHX9 / LIM/homeobox protein Lhx9
  
Possible biological names infered from orthology : LIM homeobox 9 / Q9NQ69 / Q9WUH2
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 2288065
Gene end: 2297811
  
Corresponding Affymetrix probe sets: Gga.17455.1.S1_at (Chicken Array)   Gga.2348.1.S1_at (Chicken Array)   Gga.2348.1.S1_a_at (Chicken Array)   Gga.2348.2.S1_at (Chicken Array)   Gga.2348.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003475
NCBI entrez gene - 396397     See in Manteia.
RefSeq - XM_015290253
RefSeq - NM_205426
RefSeq - XM_015290251
RefSeq - XM_015290252
RefSeq - XM_015290250
RefSeq Peptide - NP_990757
swissprot - F1NV70
Ensembl - ENSGALG00000002223
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lhx9ENSDARG00000056979Danio rerio
 LHX9ENSG00000143355Homo sapiens
 Lhx9ENSMUSG00000019230Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX2 / LIM/homeobox protein Lhx2 ENSGALG0000000112470
LHX6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSGALG0000000134726
LHX1 / LIM/homeobox protein Lhx1 / P48742* / P63006* / LIM homeobox 1*ENSGALG0000000540926
LHX5 / Gallus gallus LIM homeobox 5 (LHX5), mRNA. / P61375* / Q9H2C1* / LIM homeobox 5* / LIM homeobox protein 5*ENSGALG0000000830326
LHX8 / LIM/homeobox protein Lhx8 / O35652* / Q68G74* / LIM homeobox 8*ENSGALG0000001136926
LMX1B / P53413 / LIM/homeobox protein LMX-1.2 / O60663* / LIM homeobox transcription factor 1 beta*ENSGALG0000004058225
ISL1 / P50211 / Insulin gene enhancer protein ISL-1 / P61372* / P61371* / ISL LIM homeobox 1* / Insulin enhancer protein ISL-1 *ENSGALG0000001488424
LMX1A / LIM homeobox transcription factor 1 alpha / Q8TE12* / Q9JKU8*ENSGALG0000000342424
LHX3 / LIM/homeobox protein Lhx3 / Q9UBR4* / P50481* / LIM homeobox 3* / LIM homeobox protein 3*ENSGALG0000000392823
LHX4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSGALG0000003658722
ISL2 / ISL LIM homeobox 2 / Q96A47* / Q9CXV0* / Insulin enhancer protein ISL-2 *ENSGALG0000003339117
LMO3 / LIM domain only 3 / Q8BZL8* / Q8TAP4* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSGALG0000003635815
ENSGALG0000003567915
LMO4 / LIM domain only 4 / P61968* / P61969* / LIM domain transcription factor LMO4 *ENSGALG0000000625215
LMO2 / LIM domain only 2 / P25791* / P25801* / Rhombotin-2 *ENSGALG0000002989212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0008585 female gonad development IEA
 biological_processGO:0035262 gonad morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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