ENSDARG00000056979


Danio rerio

Features
Gene ID: ENSDARG00000056979
  
Biological name :lhx9
  
Synonyms : lhx9 / LIM homeobox 9 / Q1LWV4
  
Possible biological names infered from orthology : LIM/homeobox protein Lhx9 / Q9NQ69 / Q9WUH2
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 23238790
Gene end: 23253481
  
Corresponding Affymetrix probe sets: Dr.16939.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000054806
Ensembl peptide - ENSDARP00000143543
NCBI entrez gene - 550405     See in Manteia.
swissprot - F1QG26
swissprot - Q1LWV4
ZFIN ID - ZDB-GENE-050417-210
Ensembl - ENSDARG00000056979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LHX9ENSGALG00000002223Gallus gallus
 LHX9ENSG00000143355Homo sapiens
 Lhx9ENSMUSG00000019230Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lhx2b / LIM homeobox 2bENSDARG0000003122271
lhx2a / LIM homeobox 2aENSDARG0000003796444
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689628
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349926
lhx8a / LIM homeobox 8a / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000000233026
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793625
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791525
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397125
lhx1a / Q90476 / LIM homeobox 1a / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000001401824
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481524
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836523
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402323
lhx1b / LIM homeobox 1b / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000000794423
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035422
si:ch211-236k19.2 / LHX6* / Q9R1R0* / Q9UPM6* / LIM homeobox 6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000005216522
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945822
lhx8b / LIM homeobox 8b / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000004214521
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380321
isl1l / islet1, likeENSDARG0000002105519
lmo4a / LIM domain only 4aENSDARG0000001385316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021794 thalamus development IGI
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0048665 neuron fate specification IMP
 biological_processGO:0097380 dorsal spinal cord interneuron anterior axon guidance ISS
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity ISS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005778 hypocretin-secreting neuron hypocretin-secreting neuron decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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