ENSDARG00000013853


Danio rerio

Features
Gene ID: ENSDARG00000013853
  
Biological name :lmo4a
  
Synonyms : LIM domain only 4a / lmo4a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 32924669
Gene end: 32962023
  
Corresponding Affymetrix probe sets: Dr.6295.1.S1_at (Zebrafish Array)   NM_177984_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000079654
Ensembl peptide - ENSDARP00000147813
NCBI entrez gene - 114412     See in Manteia.
RefSeq - NM_177984
RefSeq Peptide - NP_817093
swissprot - Q8QG63
ZFIN ID - ZDB-GENE-010702-1
Ensembl - ENSDARG00000013853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-90l8.3ENSDARG0000010367681
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474974
zgc:56628ENSDARG0000011002060
lmo1 / Q8JFQ2 / LIM domain only 1ENSDARG0000003450442
lmo3 / Q503U0 / LIM domain only 3 / Q8TAP4* / Q8BZL8* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSDARG0000000872041
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697939
lhx2b / LIM homeobox 2bENSDARG0000003122239
lhx2a / LIM homeobox 2aENSDARG0000003796437
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481537
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836535
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397135
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380335
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791535
lmo2 / Q9PTJ3 / LIM domain only 2 (rhombotin-like 1) / P25791* / P25801* / Rhombotin-2 * / LIM domain only 2*ENSDARG0000009501935
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349934
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945834
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402333
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035433
lhx1a / Q90476 / LIM homeobox 1a / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000001401832
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689632


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030900 forebrain development IMP
 biological_processGO:0031076 embryonic camera-type eye development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000032 hypothalamus hypothalamus increased size , abnormal
Show

 ZFA:0000050 optic vesicle optic vesicle has extra parts of type neurectodermal cell , abnormal
optic vesicle increased size , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle morphology , abnormal
Show

 ZFA:0000079 telencephalon telencephalon increased length , abnormal
Show

 ZFA:0000101 diencephalon diencephalon increased length , abnormal
diencephalon increased size , abnormal
Show

 ZFA:0000107 eye eye increased size , abnormal
Show

 ZFA:0000132 neural plate neural plate increased size , abnormal
Show

 ZFA:0000137 optic stalk optic stalk increased size , abnormal
Show

 ZFA:0000152 retina retina increased size , abnormal
Show

 ZFA:0001114 head head morphology , abnormal
head increased size , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin morphology , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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