ENSDARG00000034504


Danio rerio

Features
Gene ID: ENSDARG00000034504
  
Biological name :lmo1
  
Synonyms : LIM domain only 1 / lmo1 / Q8JFQ2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 28109364
Gene end: 28148310
  
Corresponding Affymetrix probe sets: Dr.19237.1.S1_at (Zebrafish Array)   NM_173219_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000044207
Ensembl peptide - ENSDARP00000135314
NCBI entrez gene - 280646     See in Manteia.
RefSeq - NM_173219
RefSeq Peptide - NP_775326
swissprot - B2GQX2
swissprot - A0A0R4IIA9
swissprot - Q8JFQ2
ZFIN ID - ZDB-GENE-021115-6
Ensembl - ENSDARG00000034504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000035679Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmo3 / Q503U0 / LIM domain only 3 / Q8TAP4* / Q8BZL8* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSDARG0000000872075
lmo2 / Q9PTJ3 / LIM domain only 2 (rhombotin-like 1) / P25791* / P25801* / Rhombotin-2 * / LIM domain only 2*ENSDARG0000009501943
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474941
si:dkey-90l8.3ENSDARG0000010367641
lmo4a / LIM domain only 4aENSDARG0000001385340
zgc:56628ENSDARG0000011002039
lhx2b / LIM homeobox 2bENSDARG0000003122235
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481534
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697934
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397133
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791532
lhx2a / LIM homeobox 2aENSDARG0000003796431
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945831
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689631
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836531
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380331
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349931
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035430
isl1l / islet1, likeENSDARG0000002105529
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402329


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus ISS
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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