ENSDARG00000020354


Danio rerio

Features
Gene ID: ENSDARG00000020354
  
Biological name :lmx1a
  
Synonyms : LIM homeobox transcription factor 1, alpha / lmx1a
  
Possible biological names infered from orthology : Q8TE12 / Q9JKU8
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 33922339
Gene end: 33940260
  
Corresponding Affymetrix probe sets: Dr.13964.1.S1_at (Zebrafish Array)   Dr.13964.2.A1_at (Zebrafish Array)   Dr.13964.3.A1_at (Zebrafish Array)   NM_001025498_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123281
Ensembl peptide - ENSDARP00000119321
Ensembl peptide - ENSDARP00000006532
NCBI entrez gene - 558036     See in Manteia.
RefSeq - NM_001025498
RefSeq - XM_021468445
RefSeq Peptide - NP_001020669
swissprot - F6PDS9
swissprot - F6NUH5
swissprot - Q5RI65
ZFIN ID - ZDB-GENE-041014-332
Ensembl - ENSDARG00000020354
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMX1AENSGALG00000003424Gallus gallus
 LMX1AENSG00000162761Homo sapiens
 Lmx1aENSMUSG00000026686Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481554
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836552
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791550
lhx1b / LIM homeobox 1b / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000000794430
lhx1a / Q90476 / LIM homeobox 1a / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000001401828
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402328
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349927
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793627
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397127
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945827
lhx2b / LIM homeobox 2bENSDARG0000003122226
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380325
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697924
lhx2a / LIM homeobox 2aENSDARG0000003796423
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689623
isl1l / islet1, likeENSDARG0000002105522
lhx8a / LIM homeobox 8a / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000000233022
si:ch211-236k19.2 / LHX6* / Q9R1R0* / Q9UPM6* / LIM homeobox 6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000005216521
lhx8b / LIM homeobox 8b / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000004214521
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474916


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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