ENSDARG00000014018


Danio rerio

Features
Gene ID: ENSDARG00000014018
  
Biological name :lhx1a
  
Synonyms : lhx1a / LIM homeobox 1a / Q90476
  
Possible biological names infered from orthology : LHX1 / LIM homeobox 1 / LIM/homeobox protein Lhx1 / P48742 / P63006
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 27703409
Gene end: 27710575
  
Corresponding Affymetrix probe sets: Dr.24443.1.A1_at (Zebrafish Array)   Dr.364.1.S1_at (Zebrafish Array)   NM_131216_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000021069
Ensembl peptide - ENSDARP00000120823
NCBI entrez gene - 30463     See in Manteia.
RefSeq - NM_131216
RefSeq Peptide - NP_571291
swissprot - E9QII0
swissprot - B3DGH2
swissprot - Q90476
ZFIN ID - ZDB-GENE-980526-347
Ensembl - ENSDARG00000014018
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LHX1ENSGALG00000005409Gallus gallus
 LHX1ENSG00000273706Homo sapiens
 Lhx1ENSMUSG00000018698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lhx1b / LIM homeobox 1b / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000000794480
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793671
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945838
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380333
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836530
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481529
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349926
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035426
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791525
lhx2b / LIM homeobox 2bENSDARG0000003122225
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697924
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402324
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397124
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689623
lhx8a / LIM homeobox 8a / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000000233022
lhx2a / LIM homeobox 2aENSDARG0000003796421
lhx8b / LIM homeobox 8b / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000004214520
si:ch211-236k19.2 / LHX6* / Q9R1R0* / Q9UPM6* / LIM homeobox 6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000005216520
isl1l / islet1, likeENSDARG0000002105520
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development ISS
 biological_processGO:0001657 ureteric bud development ISS
 biological_processGO:0001702 gastrulation with mouth forming second ISS
 biological_processGO:0001705 ectoderm formation ISS
 biological_processGO:0001706 endoderm formation ISS
 biological_processGO:0001822 kidney development ISS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II ISS
 biological_processGO:0007267 cell-cell signaling ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process ISS
 biological_processGO:0008045 motor neuron axon guidance ISS
 biological_processGO:0009653 anatomical structure morphogenesis ISS
 biological_processGO:0009791 post-embryonic development ISS
 biological_processGO:0009880 embryonic pattern specification ISS
 biological_processGO:0009948 anterior/posterior axis specification ISS
 biological_processGO:0009952 anterior/posterior pattern specification ISS
 biological_processGO:0009953 dorsal/ventral pattern formation ISS
 biological_processGO:0010468 regulation of gene expression ISS
 biological_processGO:0010842 retina layer formation ISS
 biological_processGO:0021527 spinal cord association neuron differentiation ISS
 biological_processGO:0021549 cerebellum development ISS
 biological_processGO:0021702 cerebellar Purkinje cell differentiation ISS
 biological_processGO:0021871 forebrain regionalization ISS
 biological_processGO:0021937 cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation ISS
 biological_processGO:0040019 positive regulation of embryonic development ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis ISS
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye ISS
 biological_processGO:0060322 head development ISS
 biological_processGO:0060429 epithelium development ISS
 biological_processGO:0061205 paramesonephric duct development ISS
 biological_processGO:0072049 comma-shaped body morphogenesis ISS
 biological_processGO:0072050 S-shaped body morphogenesis ISS
 biological_processGO:0072077 renal vesicle morphogenesis ISS
 biological_processGO:0072178 nephric duct morphogenesis ISS
 biological_processGO:0090009 primitive streak formation ISS
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis ISS
 biological_processGO:0097379 dorsal spinal cord interneuron posterior axon guidance ISS
 biological_processGO:0097477 lateral motor column neuron migration ISS
 biological_processGO:2000543 positive regulation of gastrulation ISS
 biological_processGO:2000744 positive regulation of anterior head development ISS
 biological_processGO:2000768 positive regulation of nephron tubule epithelial cell differentiation ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0032991 protein-containing complex ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0003714 transcription corepressor activity ISS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr