ENSGALG00000005409


Gallus gallus

Features
Gene ID: ENSGALG00000005409
  
Biological name :LHX1
  
Synonyms : LHX1 / LIM/homeobox protein Lhx1
  
Possible biological names infered from orthology : LIM homeobox 1 / P48742 / P63006
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 8410268
Gene end: 8413427
  
Corresponding Affymetrix probe sets: Gga.789.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008672
NCBI entrez gene - 396381     See in Manteia.
RefSeq - NM_205413
RefSeq - XM_015295682
RefSeq Peptide - NP_990744
swissprot - F1NX79
Ensembl - ENSGALG00000005409
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lhx1aENSDARG00000014018Danio rerio
 lhx1bENSDARG00000007944Danio rerio
 LHX1ENSG00000273706Homo sapiens
 Lhx1ENSMUSG00000018698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX5 / Gallus gallus LIM homeobox 5 (LHX5), mRNA. / P61375* / Q9H2C1* / LIM homeobox 5* / LIM homeobox protein 5*ENSGALG0000000830374
LHX4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSGALG0000003658737
LHX3 / LIM/homeobox protein Lhx3 / Q9UBR4* / P50481* / LIM homeobox 3* / LIM homeobox protein 3*ENSGALG0000000392836
LMX1B / P53413 / LIM/homeobox protein LMX-1.2 / O60663* / LIM homeobox transcription factor 1 beta*ENSGALG0000004058230
LMX1A / LIM homeobox transcription factor 1 alpha / Q8TE12* / Q9JKU8*ENSGALG0000000342430
LHX9 / LIM/homeobox protein Lhx9 / Q9NQ69* / Q9WUH2* / LIM homeobox 9*ENSGALG0000000222325
LHX2 / LIM/homeobox protein Lhx2 ENSGALG0000000112425
ISL1 / P50211 / Insulin gene enhancer protein ISL-1 / P61372* / P61371* / ISL LIM homeobox 1* / Insulin enhancer protein ISL-1 *ENSGALG0000001488424
LHX6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSGALG0000000134723
LHX8 / LIM/homeobox protein Lhx8 / O35652* / Q68G74* / LIM homeobox 8*ENSGALG0000001136922
ISL2 / ISL LIM homeobox 2 / Q96A47* / Q9CXV0* / Insulin enhancer protein ISL-2 *ENSGALG0000003339118
LMO4 / LIM domain only 4 / P61968* / P61969* / LIM domain transcription factor LMO4 *ENSGALG0000000625214
ENSGALG0000003567912
LMO3 / LIM domain only 3 / Q8BZL8* / Q8TAP4* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSGALG0000003635811
LMO2 / LIM domain only 2 / P25791* / P25801* / Rhombotin-2 *ENSGALG0000002989210


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development IEA
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001702 gastrulation with mouth forming second IEA
 biological_processGO:0001705 ectoderm formation IEA
 biological_processGO:0001706 endoderm formation IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0001823 mesonephros development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007267 cell-cell signaling IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0009653 anatomical structure morphogenesis IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0009948 anterior/posterior axis specification IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0021510 spinal cord development IEA
 biological_processGO:0021517 ventral spinal cord development IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0021871 forebrain regionalization IEA
 biological_processGO:0021937 cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation IEA
 biological_processGO:0032525 somite rostral/caudal axis specification IEA
 biological_processGO:0035846 oviduct epithelium development IEA
 biological_processGO:0035847 uterine epithelium development IEA
 biological_processGO:0035849 nephric duct elongation IEA
 biological_processGO:0035852 horizontal cell localization IEA
 biological_processGO:0040019 positive regulation of embryonic development IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0048793 pronephros development IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye IEA
 biological_processGO:0060065 uterus development IEA
 biological_processGO:0060066 oviduct development IEA
 biological_processGO:0060067 cervix development IEA
 biological_processGO:0060068 vagina development IEA
 biological_processGO:0060322 head development IEA
 biological_processGO:0060429 epithelium development IEA
 biological_processGO:0061205 paramesonephric duct development IEA
 biological_processGO:0072001 renal system development IEA
 biological_processGO:0072049 comma-shaped body morphogenesis IEA
 biological_processGO:0072050 S-shaped body morphogenesis IEA
 biological_processGO:0072077 renal vesicle morphogenesis IEA
 biological_processGO:0072178 nephric duct morphogenesis IEA
 biological_processGO:0072283 metanephric renal vesicle morphogenesis IEA
 biological_processGO:0072284 metanephric S-shaped body morphogenesis IEA
 biological_processGO:0090009 primitive streak formation IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0097477 lateral motor column neuron migration IEA
 biological_processGO:2000543 positive regulation of gastrulation IEA
 biological_processGO:2000744 positive regulation of anterior head development IEA
 biological_processGO:2000768 positive regulation of nephron tubule epithelial cell differentiation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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