ENSDARG00000007944


Danio rerio

Features
Gene ID: ENSDARG00000007944
  
Biological name :lhx1b
  
Synonyms : lhx1b / LIM homeobox 1b
  
Possible biological names infered from orthology : LHX1 / LIM homeobox 1 / LIM/homeobox protein Lhx1 / P48742 / P63006
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 56268436
Gene end: 56274174
  
Corresponding Affymetrix probe sets: Dr.277.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000025458
NCBI entrez gene - 30454     See in Manteia.
swissprot - O13106
ZFIN ID - ZDB-GENE-980526-116
Ensembl - ENSDARG00000007944
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LHX1ENSGALG00000005409Gallus gallus
 LHX1ENSG00000273706Homo sapiens
 Lhx1ENSMUSG00000018698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lhx1a / Q90476 / LIM homeobox 1a / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000001401880
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793667
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945836
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380331
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836528
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481528
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035427
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791525
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349925
lhx2b / LIM homeobox 2bENSDARG0000003122224
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397124
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697923
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689623
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402323
lhx8a / LIM homeobox 8a / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000000233022
lhx2a / LIM homeobox 2aENSDARG0000003796421
lhx8b / LIM homeobox 8b / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000004214519
isl1l / islet1, likeENSDARG0000002105519
si:ch211-236k19.2 / LHX6* / Q9R1R0* / Q9UPM6* / LIM homeobox 6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000005216518
lmo4a / LIM domain only 4aENSDARG0000001385313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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