ENSDARG00000002330


Danio rerio

Features
Gene ID: ENSDARG00000002330
  
Biological name :lhx8a
  
Synonyms : lhx8a / LIM homeobox 8a
  
Possible biological names infered from orthology : LHX8 / LIM homeobox 8 / LIM/homeobox protein Lhx8 / O35652 / Q68G74
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 11205795
Gene end: 11210168
  
Corresponding Affymetrix probe sets: Dr.25698.1.S1_at (Zebrafish Array)   Dr.9994.1.A1_at (Zebrafish Array)   NM_001003980_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000028001
Ensembl peptide - ENSDARP00000120611
NCBI entrez gene - 378959     See in Manteia.
RefSeq - NM_001003980
RefSeq Peptide - NP_001003980
swissprot - F6NIJ6
swissprot - A5PMV8
ZFIN ID - ZDB-GENE-031008-2
Ensembl - ENSDARG00000002330
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LHX8ENSGALG00000011369Gallus gallus
 LHX8ENSG00000162624Homo sapiens
 Lhx8ENSMUSG00000096225Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689661
lhx8b / LIM homeobox 8b / LHX8* / O35652* / Q68G74* / LIM homeobox 8* / LIM/homeobox protein Lhx8 *ENSDARG0000004214548
si:ch211-236k19.2 / LHX6* / Q9R1R0* / Q9UPM6* / LIM homeobox 6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000005216541
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697931
lhx2b / LIM homeobox 2bENSDARG0000003122231
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481529
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836528
lhx2a / LIM homeobox 2aENSDARG0000003796428
lhx1a / Q90476 / LIM homeobox 1a / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000001401827
lhx1b / LIM homeobox 1b / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000000794427
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402327
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349927
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791527
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397127
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793626
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945826
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380325
isl1l / islet1, likeENSDARG0000002105524
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035424
si:dkey-90l8.3ENSDARG0000010367616


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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