ENSDARG00000054749


Danio rerio

Features
Gene ID: ENSDARG00000054749
  
Biological name :lmo4b
  
Synonyms : LIM domain only 4b / lmo4b
  
Possible biological names infered from orthology : LIM domain only 4 / LIM domain transcription factor LMO4 / LMO4 / P61968 / P61969
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 25933736
Gene end: 25952870
  
Corresponding Affymetrix probe sets: Dr.19236.1.S1_at (Zebrafish Array)   NM_212689_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000071465
Ensembl peptide - ENSDARP00000123719
NCBI entrez gene - 324849     See in Manteia.
RefSeq - NM_212689
RefSeq Peptide - NP_997854
swissprot - Q6DHC2
ZFIN ID - ZDB-GENE-030131-3570
Ensembl - ENSDARG00000054749
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMO4ENSGALG00000006252Gallus gallus
 LMO4ENSG00000143013Homo sapiens
 Lmo4ENSMUSG00000028266Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmo4a / LIM domain only 4aENSDARG0000001385375
si:dkey-90l8.3ENSDARG0000010367672
zgc:56628ENSDARG0000011002062
lmo1 / Q8JFQ2 / LIM domain only 1ENSDARG0000003450444
lmo3 / Q503U0 / LIM domain only 3 / Q8TAP4* / Q8BZL8* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSDARG0000000872042
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481542
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836539
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791538
lhx2b / LIM homeobox 2bENSDARG0000003122237
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697937
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397136
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380336
lhx2a / LIM homeobox 2aENSDARG0000003796436
lmo2 / Q9PTJ3 / LIM domain only 2 (rhombotin-like 1) / P25791* / P25801* / Rhombotin-2 * / LIM domain only 2*ENSDARG0000009501936
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689635
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035435
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349935
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945834
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793633
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402333


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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