ENSG00000143013


Homo sapiens

Features
Gene ID: ENSG00000143013
  
Biological name :LMO4
  
Synonyms : LIM domain only 4 / LMO4 / P61968
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p22.3
Gene start: 87328468
Gene end: 87348923
  
Corresponding Affymetrix probe sets: 209204_at (Human Genome U133 Plus 2.0 Array)   209205_s_at (Human Genome U133 Plus 2.0 Array)   227155_at (Human Genome U133 Plus 2.0 Array)   229537_at (Human Genome U133 Plus 2.0 Array)   241922_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359573
Ensembl peptide - ENSP00000359575
NCBI entrez gene - 8543     See in Manteia.
OMIM - 603129
RefSeq - XM_005271291
RefSeq - NM_006769
RefSeq Peptide - NP_006760
swissprot - P61968
Ensembl - ENSG00000143013
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmo4bENSDARG00000054749Danio rerio
 LMO4ENSGALG00000006252Gallus gallus
 Lmo4ENSMUSG00000028266Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMO1 / P25800 / LIM domain only 1ENSG0000016640742
LMX1A / Q8TE12 / LIM homeobox transcription factor 1 alphaENSG0000016276138
LMX1B / O60663 / LIM homeobox transcription factor 1 betaENSG0000013694438
ISL2 / Q96A47 / ISL LIM homeobox 2ENSG0000015955638
LHX9 / Q9NQ69 / LIM homeobox 9ENSG0000014335538
LHX2 / P50458 / LIM homeobox 2ENSG0000010668937
LMO2 / P25791 / LIM domain only 2ENSG0000013536336
LHX3 / Q9UBR4 / LIM homeobox 3ENSG0000010718736
LHX6 / Q9UPM6 / LIM homeobox 6ENSG0000010685236
LMO3 / Q8TAP4 / LIM domain only 3ENSG0000004854036
LHX4 / Q969G2 / LIM homeobox 4ENSG0000012145435
LHX8 / Q68G74 / LIM homeobox 8ENSG0000016262435
LHX5 / Q9H2C1 / LIM homeobox 5ENSG0000008911634
ISL1 / P61371 / ISL LIM homeobox 1ENSG0000001608234
LHX1 / P48742 / LIM homeobox 1ENSG0000027370634


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure ISS
 biological_processGO:0003281 ventricular septum development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II ISS
 biological_processGO:0021514 ventral spinal cord interneuron differentiation IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0030334 regulation of cell migration ISS
 biological_processGO:0031333 negative regulation of protein complex assembly IEA
 biological_processGO:0033674 positive regulation of kinase activity ISS
 biological_processGO:0042659 regulation of cell fate specification IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0050865 regulation of cell activation IEA
 cellular_componentGO:0005667 transcription factor complex ISS
 cellular_componentGO:0031252 cell leading edge ISS
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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