ENSG00000048540


Homo sapiens

Features
Gene ID: ENSG00000048540
  
Biological name :LMO3
  
Synonyms : LIM domain only 3 / LMO3 / Q8TAP4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p12.3
Gene start: 16548373
Gene end: 16610594
  
Corresponding Affymetrix probe sets: 1565936_a_at (Human Genome U133 Plus 2.0 Array)   1565937_a_at (Human Genome U133 Plus 2.0 Array)   204424_s_at (Human Genome U133 Plus 2.0 Array)   231348_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000438187
Ensembl peptide - ENSP00000261169
Ensembl peptide - ENSP00000312856
Ensembl peptide - ENSP00000346689
Ensembl peptide - ENSP00000379508
Ensembl peptide - ENSP00000404386
Ensembl peptide - ENSP00000404656
Ensembl peptide - ENSP00000412479
Ensembl peptide - ENSP00000413703
Ensembl peptide - ENSP00000437890
Ensembl peptide - ENSP00000439275
Ensembl peptide - ENSP00000439900
Ensembl peptide - ENSP00000439989
Ensembl peptide - ENSP00000440099
Ensembl peptide - ENSP00000440885
Ensembl peptide - ENSP00000440948
Ensembl peptide - ENSP00000441360
Ensembl peptide - ENSP00000442713
Ensembl peptide - ENSP00000442786
Ensembl peptide - ENSP00000443807
Ensembl peptide - ENSP00000444269
Ensembl peptide - ENSP00000444393
Ensembl peptide - ENSP00000445193
Ensembl peptide - ENSP00000445504
Ensembl peptide - ENSP00000445751
Ensembl peptide - ENSP00000446095
Ensembl peptide - ENSP00000446115
Ensembl peptide - ENSP00000446463
Ensembl peptide - ENSP00000481643
NCBI entrez gene - 55885     See in Manteia.
OMIM - 180386
RefSeq - XM_011520762
RefSeq - XM_011520763
RefSeq - XM_017019643
RefSeq - XM_006719110
RefSeq - XM_006719111
RefSeq - NM_001001395
RefSeq - NM_001243609
RefSeq - NM_001243610
RefSeq - NM_001243611
RefSeq - NM_001243612
RefSeq - NM_001243613
RefSeq - NM_018640
RefSeq Peptide - NP_001230541
RefSeq Peptide - NP_001230542
RefSeq Peptide - NP_061110
RefSeq Peptide - NP_001230540
RefSeq Peptide - NP_001230539
RefSeq Peptide - NP_001001395
RefSeq Peptide - NP_001230538
swissprot - A0A087WYA2
swissprot - C9JE61
swissprot - F5GZR3
swissprot - F5H2N9
swissprot - F5H3S4
swissprot - F5H4T0
swissprot - F5H4K9
swissprot - F5H655
swissprot - F6TDU8
swissprot - F5GYZ6
swissprot - Q05D86
swissprot - Q8TAP4
swissprot - A0A024RAT1
Ensembl - ENSG00000048540
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmo3ENSDARG00000008720Danio rerio
 LMO3ENSGALG00000036358Gallus gallus
 Lmo3ENSMUSG00000030226Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMO1 / P25800 / LIM domain only 1ENSG0000016640767
LMO2 / P25791 / LIM domain only 2ENSG0000013536340
LMO4 / P61968 / LIM domain only 4ENSG0000014301336
LHX2 / P50458 / LIM homeobox 2ENSG0000010668934
LHX9 / Q9NQ69 / LIM homeobox 9ENSG0000014335534
LHX4 / Q969G2 / LIM homeobox 4ENSG0000012145434
LHX3 / Q9UBR4 / LIM homeobox 3ENSG0000010718734
LMX1A / Q8TE12 / LIM homeobox transcription factor 1 alphaENSG0000016276132
LMX1B / O60663 / LIM homeobox transcription factor 1 betaENSG0000013694430
ISL2 / Q96A47 / ISL LIM homeobox 2ENSG0000015955629
LHX6 / Q9UPM6 / LIM homeobox 6ENSG0000010685228
ISL1 / P61371 / ISL LIM homeobox 1ENSG0000001608228
LHX1 / P48742 / LIM homeobox 1ENSG0000027370627
LHX8 / Q68G74 / LIM homeobox 8ENSG0000016262427
LHX5 / Q9H2C1 / LIM homeobox 5ENSG0000008911626


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0035360 positive regulation of peroxisome proliferator activated receptor signaling pathway IDA
 biological_processGO:0045600 positive regulation of fat cell differentiation IMP
 biological_processGO:0070373 negative regulation of ERK1 and ERK2 cascade IDA
 biological_processGO:2000324 positive regulation of glucocorticoid receptor signaling pathway IDA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr