ENSG00000107187


Homo sapiens

Features
Gene ID: ENSG00000107187
  
Biological name :LHX3
  
Synonyms : LHX3 / LIM homeobox 3 / Q9UBR4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.3
Gene start: 136196250
Gene end: 136205128
  
Corresponding Affymetrix probe sets: 221670_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360811
Ensembl peptide - ENSP00000360813
Ensembl peptide - ENSP00000483080
NCBI entrez gene - 8022     See in Manteia.
OMIM - 600577
RefSeq - XM_017015168
RefSeq - NM_014564
RefSeq - NM_178138
RefSeq - XM_005263410
RefSeq Peptide - NP_055379
RefSeq Peptide - NP_835258
swissprot - F1T0D5
swissprot - F1T0D7
swissprot - F1T0D9
swissprot - Q9UBR4
Ensembl - ENSG00000107187
  
Related genetic diseases (OMIM): 221750 - Pituitary hormone deficiency, combined, 3, 221750

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LHX3ENSDARG00000003803Danio rerio
 LHX3ENSGALG00000003928Gallus gallus
 Lhx3ENSMUSG00000026934Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX4 / Q969G2 / LIM homeobox 4ENSG0000012145463
LHX5 / Q9H2C1 / LIM homeobox 5ENSG0000008911638
LHX1 / P48742 / LIM homeobox 1ENSG0000027370637
LMX1A / Q8TE12 / LIM homeobox transcription factor 1 alphaENSG0000016276131
LMX1B / O60663 / LIM homeobox transcription factor 1 betaENSG0000013694429
ISL2 / Q96A47 / ISL LIM homeobox 2ENSG0000015955625
ISL1 / P61371 / ISL LIM homeobox 1ENSG0000001608225
LHX2 / P50458 / LIM homeobox 2ENSG0000010668925
LHX6 / Q9UPM6 / LIM homeobox 6ENSG0000010685224
LHX8 / Q68G74 / LIM homeobox 8ENSG0000016262424
LHX9 / Q9NQ69 / LIM homeobox 9ENSG0000014335523
LMO4 / P61968 / LIM domain only 4ENSG0000014301315
LMO3 / Q8TAP4 / LIM domain only 3ENSG0000004854014
LMO1 / P25800 / LIM domain only 1ENSG0000016640714
LMO2 / P25791 / LIM domain only 2ENSG0000013536312


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0021520 spinal cord motor neuron cell fate specification IEA
 biological_processGO:0021521 ventral spinal cord interneuron specification IEA
 biological_processGO:0021526 medial motor column neuron differentiation IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048839 inner ear development IEP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IPI
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of expression of SLITs and ROBOs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000839 Pituitary dwarfism "A type of reduced stature with normal proportions related to dysfunction of the pituitary gland related to either an isolated defect in the secretion of growth hormone or to panhypopituitarism, i.e., a deficit of all the anterior pituitary hormones." [HPO:curators]
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0003423 Thoracolumbar kyphoscoliosis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0008213 Pituitary gonadotropin deficiency 
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 HP:0008245 Tsh deficient hypothyroidism 
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 HP:0010627 Hypoplasia of the pituitary gland "Underdevelopment of the pituitary gland." [HPO:curators]
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 HP:0011748 Adrenocorticotropic hormone deficiency "A reduced ability to secrete adrenocorticotropic hormone (ACTH), a hormone that stimulates the adrenal cortex to secrete of glucocorticoids such as cortisol." [DDD:spark]
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 HP:0011787 Central hypothyroidism "A type of hypothyroidism due to an insufficient stimulation of an otherwise normal thyroid gland. Central hypothyroidism is caused by either pituitary (secondary hypothyroidism) or hypothalamic (tertiary hypothyroidism) defects." [DDD:spark, pmid:18415684]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012287 Hypothalamic luteinizing hormone-releasing hormone deficiency "Decreased secretion of luteinizing hormone-releasing hormone by the hypothalamus." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100842 Septo-optic dysplasia "Underdevelopment of the optic nerve and absence of the septum pellucidum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000198728 LDB1 / Q86U70 / LIM domain binding 1  / complex
 ENSG00000016082 ISL1 / P61371 / ISL LIM homeobox 1  / complex
 ENSG00000107187 LHX3 / Q9UBR4 / LIM homeobox 3  / complex






 

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